Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H24
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    49   4e-07
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.0  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    27   2.0  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   3.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   4.7  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   6.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.1  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.1  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 32/108 (29%), Positives = 54/108 (50%)
 Frame = +2

Query: 14  VGSEQLLLDTHMLKTALLELPSIGSQVKRPAPAMYTKVVVKLMSKAEMVLKLVMAPLDTN 193
           VG+EQLLLD +  K ALL+LP +           Y   +   M   E VLK ++ P    
Sbjct: 598 VGAEQLLLDLYSFKNALLKLPDLKQDYS--ITDSYINHLTIFMGYIETVLKTLLTPASPK 655

Query: 194 MEGFVSQFVQLLPECTLVEFHKVLDMKGAKLSKAQMSALDAVFRESTK 337
             GF+  ++ L+ + ++  F  +L++KG  + K+ +S+    F +  K
Sbjct: 656 -AGFIQSYIFLVKDRSVTNFTVLLELKG--VGKSDISSFLQQFSDFVK 700


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 507 DFGLTNAMGKGRA*MHSPRQKKRSLFWLRF*FYFQCSTLCMMFFFISLFEFYLTSRP 337
           DF +T   GKGRA ++ P   K    W  F F  QC+  C  ++ +      L  +P
Sbjct: 243 DFIVTE-YGKGRALLNEPSNCKVCKKWCAFDFSVQCAD-CKKYYHMDCVVPPLLKKP 297


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 530 PHYPLHWETSVSLMQWVREERKCIPLVKKKGLYFG 426
           P  P H    ++L +W+ E    I ++   GL FG
Sbjct: 170 PDVPQHISVGIALPKWISESENSIYILGFYGLVFG 204


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 89  QVKRPAPAMYTKVVVKLMSKAEMVLKLVMAPLDTNMEGFVSQFVQLL 229
           Q++ P   MY    V   + A  + KL + P D   E  V +FV+++
Sbjct: 23  QMESPPLVMYGNPDVSSGALASGLAKLTVFPADLKCESIVMEFVRII 69


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 428 QNKDLFF*RGECIYALPLPIALVRPKSPNAMGNGVRRSVSASVWDSPG 571
           QN   F    +  Y  P     VRP SP  + + +RR+   S+  +PG
Sbjct: 106 QNCGAFQELDQVSYLSPHTKLAVRPPSPKMVVDSIRRAYRVSMTGTPG 153


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -3

Query: 351 LTSRPLVLSLNTASRALI*ALDNLAPFISS--TLWNSTNVHSGK-SWTNCDTNPSILVSS 181
           +TS PL  +  T S ++        P  SS  T+ +ST V S   + TNC T+ S+L +S
Sbjct: 545 VTSTPLATTNCTTSTSVP---YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTS 601

Query: 180 GAITSFKTISA 148
             ITS  + S+
Sbjct: 602 TPITSPNSTSS 612



 Score = 25.0 bits (52), Expect = 8.1
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 351 LTSRPLVLSLNTASRALI*ALDNLAPFISS--TLWNSTNVHSGK-SWTNCDTNPSILVSS 181
           +TS PL  +  T S ++        P  SS  T+ +ST V S   + TNC T+ S+L +S
Sbjct: 486 VTSTPLTTTNCTTSTSVP---YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTS 542

Query: 180 GAITS 166
             +TS
Sbjct: 543 TPVTS 547


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 375 FISLFEFYLTSRPLVLSLNTASRALI*ALDNLA-PFISSTLWNSTNVHSGKS 223
           F+S    Y T   L LSL    R  + A+ N+  PF++S L +  N+HS KS
Sbjct: 132 FLSHHPDYPTIEELSLSL---FREKLMAVKNIQIPFLNSLLQSFENLHSSKS 180


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 202 PFHISVERRHH*FQDHLRFGHQFDNHLRIHC 110
           PF++ +E +   F+  +R   +F   + +HC
Sbjct: 156 PFYVKMEHQCKVFEAQVRLAAEFQRAVSVHC 186


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 233 ECTLVEFHKVLDMKGAKL 286
           ECT++ F K+L   G KL
Sbjct: 761 ECTILSFFKILQFYGCKL 778


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = -3

Query: 369 SLFEFYLTSRPLVLSLNTASRALI*ALDNLAPFISSTLWNSTNVHSGKSWTNCDTNP--- 199
           S+F  Y+    L L  N      +  L    P ISS LW+S  + S   W     NP   
Sbjct: 288 SVFCLYILEWFLALIFNKPPSLSVLELQMPLP-ISSALWSSKELLSKDYWRPNPLNPRDA 346

Query: 198 -SILVSSGAITSFKTISALDINLTTTFVYI 112
            SILV+   +     IS   + L   F +I
Sbjct: 347 LSILVNGPLLLEETNISGF-VLLFAIFEFI 375


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 464 IYALPLPIALVRPKSPN 514
           +Y LPL + L  PK+PN
Sbjct: 86  MYFLPLEVGLFNPKTPN 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,416
Number of Sequences: 5004
Number of extensions: 50060
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)