Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H24
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 80 1e-15
06_03_0435 - 20742551-20743351 31 0.89
06_03_0218 + 18219956-18220555 31 0.89
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353... 31 0.89
03_05_0856 - 28271274-28271408,28271532-28271645,28271950-282720... 30 1.6
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 3.6
07_03_0499 - 18789924-18790106 28 4.8
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 28 4.8
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 28 4.8
03_05_0209 + 22014556-22015308 28 4.8
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280... 28 6.3
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 28 6.3
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 28 6.3
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 27 8.3
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 80.2 bits (189), Expect = 1e-15
Identities = 42/99 (42%), Positives = 66/99 (66%)
Frame = +2
Query: 2 HEATVGSEQLLLDTHMLKTALLELPSIGSQVKRPAPAMYTKVVVKLMSKAEMVLKLVMAP 181
H + G++Q+LLDT +KT LL++PS+G Q A A Y+K V + MSKAE +LK++++P
Sbjct: 611 HISETGAQQMLLDTQAVKTILLDIPSLGKQ--STAAASYSKFVSREMSKAEALLKVILSP 668
Query: 182 LDTNMEGFVSQFVQLLPECTLVEFHKVLDMKGAKLSKAQ 298
+D+ + + LLPE T +EF ++LD+KG K + Q
Sbjct: 669 VDS----VANTYRALLPEGTPLEFQRILDLKGLKKADQQ 703
>06_03_0435 - 20742551-20743351
Length = 266
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 25 TAAAGHAHAEDGSAGAALDRVASEASSAGNVYEGGCQIDVQSGDGLE 165
TA+ GH HA D ++ AA + A+ S G + + G GLE
Sbjct: 54 TASHGHGHAADAASTAAGEAAAAAPFSCGRALDPALAVYDPRGAGLE 100
>06_03_0218 + 18219956-18220555
Length = 199
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +1
Query: 28 AAAGHAHAEDGSAGAALDRVASEASSAGNVYEGGCQIDVQSGDG 159
AA G A E+G AGA A SS G GG + DV GDG
Sbjct: 5 AAGGDAAEEEGEAGAGDGVPAKPRSSRG----GGRRCDVNGGDG 44
>02_05_1280 -
35434165-35434392,35434639-35434800,35435241-35435372,
35436048-35436115,35436719-35437313
Length = 394
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 61 SAGAALDRVASEASSAGNV--YEGGCQIDVQSGDGLETSDGAARH*YGRVCVAVC 219
+ GA + S++G V YEG +I SG L +G +R G +C+A+C
Sbjct: 243 ATGAVSTATLHQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALC 297
>03_05_0856 -
28271274-28271408,28271532-28271645,28271950-28272020,
28273791-28273839,28274721-28274812,28274901-28274943,
28275051-28275163,28275240-28275355,28275474-28275562,
28276724-28276765,28277397-28277507,28278407-28278511,
28278773-28278850,28278940-28279021,28279123-28279280
Length = 465
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 564 ESHTDAETLLRTPLPIALGDFGLTN 490
E+H L RT +P+++GD+GL N
Sbjct: 14 ENHRAGNELTRTNMPLSVGDYGLQN 38
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 25 TAAAGHAHAEDGSAGAALDRVASEASS-AGNVYEGG 129
TAA A A D AG + VA EASS AG +GG
Sbjct: 19 TAAGEEAAARDEDAGTSSHAVAGEASSGAGGGADGG 54
>07_03_0499 - 18789924-18790106
Length = 60
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +1
Query: 55 DGSAGAALDRVASEASSAGNVYEGGCQIDVQSGDGLETSDGAAR 186
DG G AL R G C DV S DG++ G R
Sbjct: 10 DGGEGMALRRCGWRGMDDAEEGRGRCGADVDSKDGVDGGGGVGR 53
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 112 CRRWTLHLRPDRGQLQQSRLQHVRVQQQLF 23
CR+W LHL G + ++RL+ V + F
Sbjct: 562 CRKWHLHLHYPLGGINENRLRKVASPHETF 591
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 482 PIALVRPKSPNAMGNGVRRSVSASVWDSPGREAS 583
P+ +VRP S A N S ++VWDS AS
Sbjct: 125 PMVVVRPNSTVAFRNFEEESRQSAVWDSEQNAAS 158
>03_05_0209 + 22014556-22015308
Length = 250
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 475 KSVNAFPSSKKKVFILAQILILFSVLDFMYDVFFHIT 365
+++ +F SKK +F+L+ + LF D+ Y FF ++
Sbjct: 60 RALGSFVMSKKALFVLSNAIFLFLAADY-YRCFFSLS 95
>11_01_0368 +
2800597-2801037,2802282-2802314,2802789-2802876,
2802984-2803465,2803552-2803818,2803955-2804304,
2804396-2804945
Length = 736
Score = 27.9 bits (59), Expect = 6.3
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 61 SAGAALD-RVASEASSAGNVYEGGCQIDVQSGDGLETSDGAARH*YGRVCVAVCPTLAGV 237
+AG LD R+AS S G+ YEGG D G ET+D RH V A P + G
Sbjct: 222 NAGDELDLRIASVVQSTGHNYEGGFWND---GHKYETAD--KRH-VAIVTTASLPWMTGT 275
Query: 238 YV 243
V
Sbjct: 276 AV 277
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 10 DCRLRTAAAGHAHAEDGSAG--AALDRVASEASSAGNVYEGG 129
+ R TAAAG+ H + G +G A R S ++AG+ GG
Sbjct: 105 EMRTATAAAGYGHGDGGGSGGRARRRRRGSGLAAAGDSNGGG 146
>03_04_0147 +
17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 37 GHAHAEDGSAGAALDRVASEASSAGN 114
G+ HAED ++G A + EA+S+GN
Sbjct: 422 GYEHAEDSASGEARFVESQEATSSGN 447
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 264 STLWNSTNVHSGKSWTNCDTNPSILVSSG 178
S + NSTN+ + NC++N + L+SSG
Sbjct: 489 SAVQNSTNLSTQDMQNNCNSNAAPLLSSG 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,925
Number of Sequences: 37544
Number of extensions: 359086
Number of successful extensions: 1180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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