Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H24
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029560-1|AAH29560.2|  128|Homo sapiens VPS53 protein protein.        87   4e-17
L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.            29   9.1  
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote...    29   9.1  
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.              29   9.1  
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v...    29   9.1  

>BC029560-1|AAH29560.2|  128|Homo sapiens VPS53 protein protein.
          Length = 128

 Score = 87.0 bits (206), Expect = 4e-17
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = +2

Query: 62  LLELPSIGSQVKRPAPAMYTKVVVKLMSKAEMVLKLVMAPLDTNMEGFVSQFVQLLPECT 241
           LL+LPSI SQV R APA YTK+VVK M++AEM+LK+VMAP +  +  FV  +++LL +C 
Sbjct: 3   LLDLPSISSQVVRKAPASYTKIVVKGMTRAEMILKVVMAPHEP-LVVFVDNYIKLLTDCN 61

Query: 242 LVEFHKVLDMKGAKLSKAQMSALD 313
              F K+LDMKG K S+ Q S L+
Sbjct: 62  TETFQKILDMKGLKRSE-QSSMLE 84


>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 223  TLAGVYVGRVP*SARYEGS*IVQGSDECSGCCVQGEH*RSRC 348
            T A   + + P S  +EG  I +G  +CS CCVQ E    +C
Sbjct: 1761 TPASSEISKAPKSG-FEGMFIRKGQWDCSVCCVQNESSSLKC 1801


>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
            protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 223  TLAGVYVGRVP*SARYEGS*IVQGSDECSGCCVQGEH*RSRC 348
            T A   + + P S  +EG  I +G  +CS CCVQ E    +C
Sbjct: 1761 TPASSEISKAPKSG-FEGMFIRKGQWDCSVCCVQNESSSLKC 1801


>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
          Length = 3224

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 223  TLAGVYVGRVP*SARYEGS*IVQGSDECSGCCVQGEH*RSRC 348
            T A   + + P S  +EG  I +G  +CS CCVQ E    +C
Sbjct: 1761 TPASSEISKAPKSG-FEGMFIRKGQWDCSVCCVQNESSSLKC 1801


>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
            variant protein.
          Length = 3138

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 223  TLAGVYVGRVP*SARYEGS*IVQGSDECSGCCVQGEH*RSRC 348
            T A   + + P S  +EG  I +G  +CS CCVQ E    +C
Sbjct: 1675 TPASSEISKAPKSG-FEGMFIRKGQWDCSVCCVQNESSSLKC 1715


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,391,865
Number of Sequences: 237096
Number of extensions: 1893395
Number of successful extensions: 8352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8345
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)