Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H24
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical pr...    88   4e-18
AF039051-5|AAB94265.2|  509|Caenorhabditis elegans Hypothetical ...    32   0.26 
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AL117195-27|CAE18006.1|  243|Caenorhabditis elegans Hypothetical...    30   1.4  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   2.4  
U46669-6|AAM51526.1|  514|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U46669-5|AAA85746.3|  493|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    28   5.6  
Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 798

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 45/92 (48%), Positives = 61/92 (66%)
 Frame = +2

Query: 8   ATVGSEQLLLDTHMLKTALLELPSIGSQVKRPAPAMYTKVVVKLMSKAEMVLKLVMAPLD 187
           +T G+EQLLL+TH LKT LL +PSI S +    P  Y   V   ++KAEM+LK+VM  L+
Sbjct: 624 STHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVNAALTKAEMILKVVMCSLE 683

Query: 188 TNMEGFVSQFVQLLPECTLVEFHKVLDMKGAK 283
           T ++ FV Q+++LLP     E  KVL+MKG K
Sbjct: 684 T-VDEFVEQYIKLLPASDAAEMQKVLEMKGVK 714


>AF039051-5|AAB94265.2|  509|Caenorhabditis elegans Hypothetical
           protein C14C6.7 protein.
          Length = 509

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 421 ILILFSVLDFMYDVFFHITIRVLLDIETFSALPEHSIQSTHLS 293
           ILI FS   F  + FF IT    ++I     +PE S  S HLS
Sbjct: 31  ILICFSNTIFSQEDFFEITTPASIEILAVETMPETSTSSFHLS 73


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 138 NLTTTFVYIAGAGRFTCDPIEG 73
           NLT+ F+Y A  G+FTCD  +G
Sbjct: 120 NLTSLFLYDANPGKFTCDSTKG 141


>AL117195-27|CAE18006.1|  243|Caenorhabditis elegans Hypothetical
           protein Y57A10A.35 protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 521 PLHWETSVSLMQWVREERKCIPLVKKKGLYFGSDFNFIFSARLY 390
           P H   ++SL+QW+R E   IPLV      F     F+F   L+
Sbjct: 71  PAHLNPAISLLQWLRNE---IPLVLLITFCFVQLIGFLFGVTLF 111


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 476 EERKCIPLVKKKGLYFGSDFNFIFSARLYV*CFFSYHY 363
           EE+K +   KKK  Y+   FN  F     + C+ +YHY
Sbjct: 691 EEKKNVEEQKKKKYYYSIRFNVTFQNTGDI-CYIAYHY 727


>U46669-6|AAM51526.1|  514|Caenorhabditis elegans Hypothetical
           protein C41G11.4b protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 429 WLRF*FYFQCSTLCMMFFFISLFEFYLTSRPLVLSLNTASRALI*ALDN 283
           W+   ++F     C +F FIS F F+LT+   VL    A R LI A  N
Sbjct: 84  WIHSYWWFGGDIGCRLFKFISTFGFHLTANMQVLV--AADRLLITAKMN 130


>U46669-5|AAA85746.3|  493|Caenorhabditis elegans Hypothetical
           protein C41G11.4a protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 429 WLRF*FYFQCSTLCMMFFFISLFEFYLTSRPLVLSLNTASRALI*ALDN 283
           W+   ++F     C +F FIS F F+LT+   VL    A R LI A  N
Sbjct: 84  WIHSYWWFGGDIGCRLFKFISTFGFHLTANMQVLV--AADRLLITAKMN 130


>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 429 WLRF*FYFQCSTLCMMFFFISLFEFYLTSRPLVLSLNTASRALI*ALDN 283
           W+   ++F     C +F FIS F F+LT+   VL    A R LI A  N
Sbjct: 84  WIHSYWWFGGDIGCRLFKFISTFGFHLTANMQVLV--AADRLLITAKMN 130


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 295 SDECSGCCVQG 327
           +DEC GCC+QG
Sbjct: 84  TDECDGCCIQG 94


>Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical
           protein K09E4.5 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 372 ISLFEFYLTSRPLVLSLNTASRALI*ALDNLAP 274
           +S++ F L SRPL+L   +A+  ++  L  LAP
Sbjct: 374 VSVWGFALLSRPLILGTLSATAMMLSLLTELAP 406


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 257 KVLDMKGAKLSKAQMSALDAVFR 325
           ++L +KG ++S AQM AL+ +F+
Sbjct: 150 ELLSLKGERVSHAQMEALEEIFK 172


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 257 KVLDMKGAKLSKAQMSALDAVFR 325
           ++L +KG ++S AQM AL+ +F+
Sbjct: 150 ELLSLKGERVSHAQMEALEEIFK 172


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 257 KVLDMKGAKLSKAQMSALDAVFR 325
           ++L +KG ++S AQM AL+ +F+
Sbjct: 150 ELLSLKGERVSHAQMEALEEIFK 172


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 257 KVLDMKGAKLSKAQMSALDAVFR 325
           ++L +KG ++S AQM AL+ +F+
Sbjct: 150 ELLSLKGERVSHAQMEALEEIFK 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,708
Number of Sequences: 27780
Number of extensions: 287091
Number of successful extensions: 1043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)