Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H23
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    30   0.23 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   0.70 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   0.70 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.8  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   4.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.6  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   8.6  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.6  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   8.6  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
 Frame = +3

Query: 156 LVDAKEDIAKHEKEYLEIIAAVKGSDKEKRLASQFIAKFFNSFPTLAEQAIEAQ-FDLCE 332
           L + K++++         +  +    KE+  A + +AKF ++  T++ + IE Q  ++ E
Sbjct: 94  LTETKQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGE 153

Query: 333 DDD---VTIRKQAIKDLPTICKDHK----EHTQRVADVLAQLLQSEDTTEI-NLVTNS 482
            DD    ++R    K    +    K    +      D ++QLLQ+  +T + NL T S
Sbjct: 154 SDDQLKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETES 211


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 342 VTIRKQAIKDLPTICKDHKEHTQRVADV 425
           V+ RK A+ ++PT+  D  +HT+ +A V
Sbjct: 59  VSDRKDALLNIPTVVDDEFQHTEELAGV 86


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 174 DIAKHEKEYLEIIAAVKGSDKEKRLASQFIAKFFNSFP--TLAEQAIEAQF 320
           DI + E+E+LEI+A ++  +KE    S+  A    + P   L+E+ +++Q+
Sbjct: 179 DIVRSEEEFLEILAKLEQQEKEASNVSE--ASRIATIPPMILSEEEVKSQY 227


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 354  KQAIKDLPTICKDHKEHTQRVADVLAQLLQ 443
            K    ++PT+CKDH      V DVL QL +
Sbjct: 1161 KDTTSEVPTVCKDH------VMDVLKQLFR 1184


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 156 LVDAKEDIAKHE----KEYLEIIAAVKGSDKEKRLASQFIAKFFNSFPTLAEQAIEAQFD 323
           L D  +D+  H+    ++++  +      D+   LAS+ I K  +S P L ++ ++ +FD
Sbjct: 378 LDDLNKDMRFHKLSEVRQHVNTLKEATKDDELAALASRVIEKIVDSGPILDKEELQTKFD 437


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 360 AIKDLPTICKDHKEHTQRVADVLAQLLQS----EDTTEINLVTNSLLTILKGD 506
           AIK+LP I K H    + +  VLA+  ++     D   +  V   LLT  K D
Sbjct: 236 AIKNLPKILKKHDNAVRSLEAVLAKFFKNPKKLPDDRPVRRVKQGLLTSEKVD 288


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 484  RELVTKLISVVSSDCKSCASTSATLCVCSL 395
            RE++  L S++ S+  S ++   T+CV SL
Sbjct: 1901 REILPTLTSIIVSNLNSSSNDRRTMCVKSL 1930


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 399 LCDLYIW*VDL 367
           LCDLY+W +DL
Sbjct: 366 LCDLYLWSIDL 376


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 490 VSRELVTKLISVVSSDCKSCASTSATLC-VCS 398
           V+RELVT  +    ++C   A +   LC VCS
Sbjct: 138 VTRELVTPNLPTFVNNCLRIAESGKCLCTVCS 169


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 298 SANVGKLLKNFAINWEAKRFSLSEPFTAAIISRYSFSCFAM 176
           S  +G  L +F   W ++RFS   P T   +  Y +S F +
Sbjct: 289 SGPLGPKLMSF---WSSRRFSTLPPETFRALHNYCYSIFRL 326


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 DDVTIRKQAIKDLPTICKDHKEHTQRVADVL 428
           D+V +   A   LPT  KD K + Q++ DV+
Sbjct: 439 DEVAVCNLASVALPTFIKDGKYNFQKLHDVV 469


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 259 NWEAKRFSLSEPFTAAIISRYSF-SCFAMSSLASTKIE 149
           NW  KRF +       ++SR S+ S   M +  +++ E
Sbjct: 452 NWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFE 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,776
Number of Sequences: 5004
Number of extensions: 29158
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)