Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H23
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 53 1e-07
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 34 0.075
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 32 0.30
05_05_0299 - 23930657-23932627 30 0.93
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 29 2.8
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 28 3.7
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 5.0
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 27 6.5
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/67 (37%), Positives = 43/67 (64%)
Frame = +3
Query: 306 IEAQFDLCEDDDVTIRKQAIKDLPTICKDHKEHTQRVADVLAQLLQSEDTTEINLVTNSL 485
+EA FDL + +++ R QAI+ P + KD E ++AD+L QLL SE+ E + V +L
Sbjct: 1 MEAMFDLVDMEELATRIQAIRGFPLLAKD-AEFVSKIADILGQLLASEENVERDAVHKAL 59
Query: 486 LTILKGD 506
+++++ D
Sbjct: 60 MSLIRQD 66
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 33.9 bits (74), Expect = 0.075
Identities = 15/68 (22%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +3
Query: 300 QAIEAQFDLCEDDDVTIRKQAI-KDLPTICKDHKEHTQRV--ADVLAQLLQSEDTTEINL 470
+++EA+ ++D +++++Q++ +L I ++HKEH +R+ +L ++ E T E++
Sbjct: 974 ESLEAKLSSLQED-ISLKEQSLLSELENIFQEHKEHEERIDRVHLLLNKIEKEKTVELSN 1032
Query: 471 VTNSLLTI 494
+ ++++
Sbjct: 1033 LEREVISL 1040
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 240 KRLASQFIAKFFNSFPTLAEQAIEAQFDLCEDDDVTIRKQAIKDLPTIC--KDHKEHTQR 413
+ A + + + S P + + IE + +D V++RK+AIK + +C + + T+
Sbjct: 782 REAALELVGRHIASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTRA 841
Query: 414 VADVLAQLLQSEDTTEINLVT 476
++++++ E + ++ LVT
Sbjct: 842 FVEIISRVNDEESSVQL-LVT 861
>05_05_0299 - 23930657-23932627
Length = 656
Score = 30.3 bits (65), Expect = 0.93
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +3
Query: 168 KEDIAKHEKEYLEIIAAVKGSDKEKRLASQFIAKFFNSFPTLAEQAIEAQFDLCEDDDVT 347
KED + +KE +I+ + G D+E S+F+ KFF P L E E ++ + +V+
Sbjct: 227 KEDDDEEKKETEQILIDIFGKDEELDENSKFLKKFFLERPYL-ETGSEKKYSPDDIQEVS 285
Query: 348 IRKQAI---KDLPTICK-DHKEHTQRVADVLAQLL 440
++ + +D T H+E ADV+ +++
Sbjct: 286 DEEEHLIEQEDYETRYNFRHEEAAATGADVMDRVM 320
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 162 DAKEDIAKHEKEYLEIIAAVKGSDKEK 242
+A+ED+A EK+Y E+ A V+ D+E+
Sbjct: 501 EAREDLAALEKDYEEVGAEVEDDDEEQ 527
>05_05_0136 -
22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 285 PTLAEQAIEAQFDLCEDDDVTIRKQAIKDLPTICKD-HKEHTQRVAD---VLAQLLQSED 452
P L I A + +I++ A+ CK K+ +Q V D VL LLQSED
Sbjct: 238 PCLQAGMITAVLTYIDFFSASIQRVAVSAAANACKKVPKDCSQFVMDSVPVLCNLLQSED 297
Query: 453 TTEINLVTNSLLTIL 497
+ V + L+ I+
Sbjct: 298 KMVVEKVASCLINIV 312
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/39 (28%), Positives = 28/39 (71%)
Frame = +1
Query: 295 QNKPLKLSLICVRMMTLLFVNKLLKIYLPYVKITKSTHK 411
+NKP L ++++T++ ++L++Y P++++T+ T+K
Sbjct: 388 KNKPDYDGLSRLKIVTMILY-EVLRLYPPFIELTRKTYK 425
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 276 NSFPTLAEQAIEAQFDLCEDDD 341
+SFP+ +A+++ FD+C DDD
Sbjct: 407 SSFPSRPLEALKSCFDVCGDDD 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,796
Number of Sequences: 37544
Number of extensions: 165324
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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