Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H22
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0978 + 7738232-7740848,7740929-7741320                           28   4.9  
10_01_0135 - 1636096-1636269,1636366-1636407,1637356-1638286,163...    27   8.6  
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597     27   8.6  

>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 202 SNTSSVMYQLKPNQLTASKAQI*CFKLFLLGISTEYKLSLNVISLISH*RHDFISSI 372
           ++T  ++Y+  PN            K  LL  ST YK++L+    +S+  HD++ +I
Sbjct: 767 NDTKLLVYEYMPNGSLGDVLH--SSKAGLLDWSTRYKIALDAAEGLSYLHHDYVPAI 821


>10_01_0135 -
           1636096-1636269,1636366-1636407,1637356-1638286,
           1638328-1638332
          Length = 383

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = -3

Query: 521 FLHFMLGTDTTILPDKWRCGPTWVNRPIIQVCMSELFKISDNLSRIINLLIEDIKSCR*W 342
           FL       T +L  +WR    W++ P+I     + F+++D  +     L   +   + +
Sbjct: 48  FLTLREAVQTCVLSRRWR--NLWLSMPLINADYKQFFEMTDTKAGYDEALAVAVPMFKRF 105

Query: 341 LIKLITFRLSLYSVD 297
           + +L+  R  + S+D
Sbjct: 106 VNRLLELRDPVASID 120


>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
          Length = 263

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 485 LPDKWRCGPTWVNRPIIQVCMSELFKISDNLSRIINLLIEDIK 357
           LP     GP      ++Q+C  E   ++ +L R+ ++ +ED++
Sbjct: 148 LPTSMLFGPQIAQERLMQLCSPEDVTLAGSLLRVSSMFVEDLQ 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349,668
Number of Sequences: 37544
Number of extensions: 303571
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)