Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H20
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    34   0.015
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    30   0.24 
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.3  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   6.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   9.1  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   9.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.1  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 356 FRAQRNFYISGFALFLLVVIRRLVQMISELAMLLAQAEANYRQAQSANTTARSL 517
           F AQRN Y+ G ALFL +V+ R    +  +     + +A   Q +++   A+++
Sbjct: 98  FYAQRNLYLCGSALFLSLVVNRYYLALEAMIAAQDKMQALQTQVEASTNNAKAV 151


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 133 QNDSYFGVKKXRVRLSTGDSFLHNII 56
           +N  Y G++K RVR    DSFL N+I
Sbjct: 208 KNHQYMGLRKDRVRGEQYDSFLDNVI 233


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
 Frame = +2

Query: 2   HEVIQYLNCCRELFCIEVDNI--VQK*VSSGQSYSXFLYAEIAV------VLLLTLPIAS 157
           HE + YL+    ++ + +  +  +   + S QSY   LY +I++      V+L  + +AS
Sbjct: 143 HEKMNYLHRWLSVYAVLISVLHGILFMIFSAQSYKPLLYDKISIYGYFITVVLFLMTVAS 202

Query: 158 -PSRWQKFFKSKFLAYISGQASIYF 229
            PS  +KFF+  F+ + +    I F
Sbjct: 203 LPSVRRKFFEWFFVLHHTCSVLIIF 227


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 186 DLKNFCHLLGLAIGKVNSRTTAISA*RNXE-YDCPLETHFCTI 61
           DLKNF  +L   + KVN +T +I   R  E + C +   FC +
Sbjct: 480 DLKNFSLVLCTHVAKVNEKTNSIF--RTYEVHGCEVCNSFCLL 520


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 398 FLLVVIRRLVQMISELAMLLAQAEAN 475
           F+LVV   + + + ELAM L   EAN
Sbjct: 6   FILVVDSSVEEQVEELAMYLDNLEAN 31


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 202 ISEEFGLEKFLPSTWARYWQSQ*QNDSYFGVKKXRVRLSTGD 77
           IS    ++  +P TW  Y+     N +Y G+     + ST +
Sbjct: 78  ISYTVAIDLDMPYTWLTYYNVMAFNPAYLGIVNSGTQWSTDE 119


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 176 ISAIYLGSLLAKSIAERQL-FRRKE-TTSTIVHWRLIFAQYYPLQCKITRDNNL 21
           ++A Y    + ++  +R   F + +  T+TI    L++AQ Y  +CK  R  +L
Sbjct: 232 VNAFYYRDPIDENYCDRMSKFNQNDLVTTTITFTPLLYAQLYQQRCKTFRPFHL 285


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 104 TTSTIVHWRLIFAQYYPLQCKITRDNNLNTVSP 6
           T ST   W +   Q YP+Q +   D+N++T +P
Sbjct: 266 TDSTFAFWDV--DQEYPVQVRNFVDSNIHTYTP 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,420
Number of Sequences: 5004
Number of extensions: 38167
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)