Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H19
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.5  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   5.9  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   7.8  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 28  LNLDLTESVNQPDLRNPSFPLDLPSNAGADSMRLPDFLPVHPGRTSPEPEHQDQQLQQII 207
           LN  L  + +   L++P+F +   SN   D   +PD  P+    + P+P    ++  Q +
Sbjct: 430 LNTSLFNTSSGGSLKSPTFEV---SNRLGDVDTVPDLPPLGSLSSRPKPSSSSRRRSQSL 486

Query: 208 SELERT 225
           S + +T
Sbjct: 487 SAMLKT 492


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 385 RQFAGQLDAAVDTLHSNLTDAASR 456
           R+F G  D A D LH    DA SR
Sbjct: 312 RKFPGNADKAQDELHQVAFDALSR 335


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 438 EIRVQSVDGSIELSRELPVAVHGA 367
           E+ +QS+  S+ L +E+P+A+ G+
Sbjct: 604 ELILQSIRLSVSLPKEIPIAILGS 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,187
Number of Sequences: 5004
Number of extensions: 22932
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)