Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H19
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 32 0.27
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 30 0.83
11_01_0703 - 5785599-5785607,5785954-5786008,5786572-5786627,578... 29 2.5
09_01_0085 - 1219117-1219653 28 3.3
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 28 3.3
12_01_0727 + 6446283-6449300 27 5.8
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 27 7.7
03_06_0101 + 31653860-31654327 27 7.7
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 169 EPEHQDQQLQQIISELERTRAELFVERSRRCRLEEEV 279
E D +LQ I +LER R E + E+ RR + E+E+
Sbjct: 214 ERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQEL 250
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 184 DQQLQQIISELERTRAELFVERSRRCRLEEEVCG 285
D+ +Q+I E ER+R + FVE +R E V G
Sbjct: 317 DKNFKQVILEAERSRKDAFVELLKRKDTESRVAG 350
>11_01_0703 -
5785599-5785607,5785954-5786008,5786572-5786627,
5786750-5786923,5787509-5787694,5787892-5788048,
5788144-5788372,5788909-5789167,5789453-5789554
Length = 408
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 7 EVDLPPHLNLDLTESVNQPDLRNPSFPLDLPSNAGADS---MRLPDF-LPVHP 153
E LP HLNL+ T+ ++ D N S + + D M PDF + VHP
Sbjct: 332 ESKLPSHLNLNETKENHEADHHNSSCSKEKEEDREEDQIIPMEHPDFPIDVHP 384
>09_01_0085 - 1219117-1219653
Length = 178
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 13 DLPPHLNLDLTESVNQPDLRNPSFPLDLPSNAGADSMRLPDFLPVHPGRTSPEPEHQDQQ 192
+L H N D+ V P N ++ + PS LP P P T PEPE
Sbjct: 24 ELSVHFNADVAAVVFSP-AGNRAYSIGDPSVMDRFLSSLP--APAPPAETEPEPEVDWSV 80
Query: 193 LQQIISELERTRAELFVERSRRCRLEEEV 279
++++ + +A + ++R + EE++
Sbjct: 81 MEELSRLCGQLQAMVDAHKARLEKAEEKL 109
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 85 PLDLPSNAGADSMRLPDFLPVHPGRTSPEPEHQDQQLQQIIS 210
P+D+ S+ + S+ +PV P S P+ ++Q + ++S
Sbjct: 351 PIDMESSESSSSVASNALVPVDPALVSSSPQTKEQDMIDLLS 392
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 128 CQTSYPCILAGLRRNPNIRISNYSK*FLNWNALGLS-CSWSAAVAAG 265
C L L+R+ + + +YS F +W A G CSW G
Sbjct: 30 CLPGQASALLQLKRSFDATVGDYSAAFRSWAAAGTDCCSWEGVRCGG 76
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 22 PHLNLDLTESVNQPDLRNPSFPLDLPSNAGADSMRLPDFLPVHPGRTSPEPEHQDQQLQQ 201
P N+D+ E QP + N P + S R P ++SP E + + +
Sbjct: 471 PSDNIDMVEQRAQPQINNEQSSPQTPLHINITSARTP--ATKKSSQSSPNIEERQYSMTR 528
Query: 202 IISEL 216
II L
Sbjct: 529 IIDSL 533
>03_06_0101 + 31653860-31654327
Length = 155
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 362 WRAPCTATGSSRDNSMLPSTLCTRISP 442
WRAP A G +RD + T C R P
Sbjct: 12 WRAPARALGRARDMYVRGMTGCARCVP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,616,804
Number of Sequences: 37544
Number of extensions: 177117
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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