Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H14
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    96   4e-21
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   3.7  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    26   4.9  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
 Frame = +3

Query: 69  KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 248
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 249 QA-----TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVM 413
           QA     +   A   K                                         +VM
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELVM 143

Query: 414 SQANVSRARAVRALRNNQSDIVNAIMELTM 503
           +QANVSRA+AV AL+ N SD+VNAIM LTM
Sbjct: 144 AQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 230 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 84
           LR+S YY S  ++     ++ D   YVL FP+ N+    Y+ E K  +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 443 SPSP*NVCLRHYYLHVFLVHS 381
           S  P  +CL  Y +H+FL+HS
Sbjct: 123 SDPPVKICLLAYSVHLFLLHS 143


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 542 KLESYVYKLLSALHRQLHNSVDDVRLVVPERT 447
           K+   ++ + + L    H++ DDV LV+P  T
Sbjct: 48  KIRKLMFAMKALLEETKHSTKDDVNLVIPGST 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,766
Number of Sequences: 5004
Number of extensions: 38901
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)