Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H14
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 133 1e-31
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 128 4e-30
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 30 1.6
07_03_1441 - 26563655-26563871,26564347-26564486 29 2.1
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.1
10_08_0171 + 15404117-15405598 28 5.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 5.0
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 28 6.5
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 6.5
03_02_0624 + 9935479-9935619,9935780-9935887 27 8.7
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 133 bits (321), Expect = 1e-31
Identities = 71/151 (47%), Positives = 96/151 (63%)
Frame = +3
Query: 48 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 227
+KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY++FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 228 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXI 407
KIEDLS Q AA++F+ A +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKVMSKPDAAAA-----APADEEEEVDETGIEPRDIDL 189
Query: 408 VMSQANVSRARAVRALRNNQSDIVNAIMELT 500
VM+QA+VSRA+AV+AL+ + DIV+AIMELT
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIVSAIMELT 220
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 128 bits (308), Expect = 4e-30
Identities = 81/178 (45%), Positives = 99/178 (55%), Gaps = 19/178 (10%)
Frame = +3
Query: 24 AGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKN----------------- 152
AG D ++KQSR EKK+RK M KLG+K + GV+RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 153 --ILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXX 326
ILFVI+ PDVFK+P+SDTY++FGEAKIEDLS Q AAE+FK
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFK-------APDLSNVI 162
Query: 327 XXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELT 500
P A +VM+QA VSR+RAV+AL+ DIV AIMELT
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMELT 220
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 205 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 92
V + G L SG +TK++FF+FL + T+L SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273
>07_03_1441 - 26563655-26563871,26564347-26564486
Length = 118
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 80 ARLLLATRLLCFGHDINACDGVRNPR 3
A LLLAT C G ++ A GVR PR
Sbjct: 14 ALLLLATAAACHGLEVGATTGVRAPR 39
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 449 CAQEQPVGHRQRYYGAD--DVRHLTIYKHNFLALSPCLNLSAYGRYYRMCYKY 601
C ++P H +++ A T + A+SPC ++S+Y +Y R+ Y
Sbjct: 468 CRDQEPAAHMKKWMSAHGGSPSRRTALNISSTAVSPCSSVSSYEQYTRLHQPY 520
>10_08_0171 + 15404117-15405598
Length = 493
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 33 DIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 137
+I + A++ + KKARK+M + G+K V G + + +
Sbjct: 412 NIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDV 446
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 572 HMRSDLNRDLKLESYVYKLLSALHRQLHNSVDDVRLVVPERTDS 441
++R DL R L L KL+ LH QL N + +P RTD+
Sbjct: 1747 YLRPDLKRGL-LSEEEEKLVIDLHEQLGNRWSKIAARLPGRTDN 1789
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 518 LLSALHRQLHNSVDDVRLVVPERTDSPSP 432
+L H Q H+S DD +L+ P R P+P
Sbjct: 431 VLDRSHDQCHDSHDDPKLLPPPRFPRPAP 459
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 554 NRDLKLESYVYKLLSALHRQLHNSVDDVRLVVPERTDSPSP*NVCLRHYYLHVF 393
N+DLKL ++++ + A + + + +R E+ P P V RH + HV+
Sbjct: 574 NKDLKLALHLFEEMKAHQLKPNLPTESLRAHNEEQQHHPVPALVYKRHQHQHVY 627
>03_02_0624 + 9935479-9935619,9935780-9935887
Length = 82
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 224 LSKYYVSVRVWVLEDIRIVDHKEYVL 147
L + S+R++ DI +VDHK Y+L
Sbjct: 26 LPRRLFSIRIFRYSDIPLVDHKRYLL 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,494
Number of Sequences: 37544
Number of extensions: 273375
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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