Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H14
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   143   1e-34
AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   142   2e-34
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    34   0.090
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    31   0.48 
Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    28   4.5  
Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   7.8  

>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  143 bits (346), Expect = 1e-34
 Identities = 82/159 (51%), Positives = 96/159 (60%)
 Frame = +3

Query: 27  GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 206
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 207 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXX 386
           YI+FGEAKIEDL+Q A M+A E  K                                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDENEDVEF-------KEDSTGI 158

Query: 387 XXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELTM 503
                 +V+SQAN +R +A+RAL+   +DIVNAIM LTM
Sbjct: 159 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  142 bits (343), Expect = 2e-34
 Identities = 82/159 (51%), Positives = 96/159 (60%)
 Frame = +3

Query: 27  GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 206
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 207 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXX 386
           YI+FGEAKIEDL+Q A M+A E  K                                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVE---------EDENEDVEEDSTGI 156

Query: 387 XXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELTM 503
                 +V+SQAN +R +A+RAL+   +DIVNAIM LTM
Sbjct: 157 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 3   TRISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINN 173
           TR S  I G+D  S+A+  R  KK   ++ +LG  +    N+V    + N+L +  N
Sbjct: 199 TRFSISILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNMLPIFAN 255


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 66  EKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLS 245
           +KK +  + KL +  + G+  V + K    +   NNP V  +  ++T+ V G A  + ++
Sbjct: 43  DKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQIT 102

Query: 246 Q 248
           +
Sbjct: 103 E 103


>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 572 HMRSDLNRDLKLESYVYKLLSALHRQLHNSVDDVRLVVPERTDS 441
           H+   +N D   + Y Y  + AL     NS+  ++L +P R ++
Sbjct: 80  HITISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNRVET 123


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 593 NTSCNIFHMRSDLNRDLKLESYVYKLLSALHRQL 492
           +++ N FH +  ++RDLKL++    LLS  HR L
Sbjct: 153 SSAVNFFHSKDQIHRDLKLQN---MLLSHHHRTL 183


>Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical
           protein ZK512.2 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -1

Query: 224 LSKYYVSVRV-----WVLEDIRIVDHKEYVL*FPYCNSVYTLYKL 105
           L  YYV  R        LE IR    K+ ++ FP CNSV   YK+
Sbjct: 232 LKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 276


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 218  WRGEDRGSVTASHYGSGREVQGTGNCC 298
            ++GE  G    +H+GS REV GT   C
Sbjct: 978  YQGERCGECAQNHWGSPREVGGTCERC 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,868
Number of Sequences: 27780
Number of extensions: 229408
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)