Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H11
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   4.5  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.5  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.0  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   6.0  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.9  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SLYNFTDELVTRVNRKTESHFVTSGL 274
           S  NF DELV RV R +  H V S L
Sbjct: 472 SYENFPDELVPRVERISSGHLVNSEL 497


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 393 ILKYFLLKHECGWSLNTTLISFRVSSVAPNDSAD 292
           + +Y+L +     SLN TL ++R+   +PN ++D
Sbjct: 712 VARYYLWRRHFAESLNATLKAYRILISSPNVTSD 745


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 257  NGFPFFD*LESQVHL*SCTMTSSKMCEPKSHRNFXY 150
            N FP  + L+   +    T+ S  +C+ K+HRNF Y
Sbjct: 1036 NRFPVVEGLQEYCNSPDVTLFSV-LCQMKNHRNFVY 1070


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 582 LATHEAIDEIVTPSDLDGVLLVLINALYFKGNWRVKFPY 698
           L     +D  +    L G ++ L NA YFKG+  +++ Y
Sbjct: 446 LEIEAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 NRKYFNILKEIGENDGGVLKLSG 442
           NRK F    EIGEN+   L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 NRKYFNILKEIGENDGGVLKLSG 442
           NRK F    EIGEN+   L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 NRKYFNILKEIGENDGGVLKLSG 442
           NRK F    EIGEN+   L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 339 LISFRVSSVAPNDSADIIVHADSPDVTKWLSV--FRLTRVTSSSVKLYN 199
           ++SF V S     S+ +IVH +  D++  LSV   RL  +   SV+  N
Sbjct: 332 ILSFPVDSFLAERSSWLIVHREVGDLSNALSVSMVRLVDILKFSVESVN 380


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 270 PDVTKWLSVFRLTRVTSSSVKL 205
           PD+  WL+V  LT +T+ S  L
Sbjct: 669 PDIDNWLNVLPLTAITTFSSML 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,335
Number of Sequences: 5004
Number of extensions: 54676
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)