Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H11
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 44 2e-04
11_02_0014 - 7352619-7352918,7353173-7353418 42 4e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 41 8e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.001
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.002
01_01_1152 + 9170628-9171899 38 0.008
11_01_0771 + 6453130-6454488 33 0.29
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.29
11_01_0767 + 6438648-6438809,6439146-6440000 32 0.38
04_04_0619 + 26652923-26653267,26653440-26654273 32 0.38
04_03_0313 + 14233049-14234362,14234558-14235523 31 1.2
07_03_1547 + 27623945-27625612 29 2.7
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 28 6.2
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 28 6.2
11_01_0750 - 6315126-6315896,6316371-6316784 28 8.3
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 28 8.3
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLDG-VLLVLINALYFKGNWRVKFPYE 701
IN +V AT++ I EI+ + G LVL+NA+YFKG W FP E
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRE 174
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKFPYE 701
IN++V AT++ I EI+ + + LVL+NA+YFKG W FP E
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRE 136
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 555 ATAINDFVRLATHEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKF 692
A+ +N +V T I EI+ P +D LVL NALYFKG W KF
Sbjct: 214 ASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 260
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 528 YLGTITRLTATAINDFVRLATHEAIDEIVTPSDLD-GVLLVLINALYFKGNWRVKF 692
++G + +N +V T I I TP ++ LVL NALYFKG W KF
Sbjct: 457 FVGHVAAEVLGQVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKF 512
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 555 ATAINDFVRLATHEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKF 692
A+ +N +V T I EI+ P +D LVL NALYFKG W KF
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 52
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLD-GVLLVLINALYFKGNWRVKFP 695
IN +V AT++ I EI+ + LVL+NA+YFKG W FP
Sbjct: 140 INKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFP 184
>01_01_1152 + 9170628-9171899
Length = 423
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLDG-VLLVLINALYFKGNWRVKF 692
+N FV AT I +++ P+ +D ++VL NA++FKG W + F
Sbjct: 163 VNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPF 206
>11_01_0771 + 6453130-6454488
Length = 452
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLDG-VLLVLINALYFKGNW 680
IN + R AT + I +++ P + +VL NA+YFKG W
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKW 216
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKF 692
IN++ AT I + + +D VL NALYFKG+W KF
Sbjct: 145 INEWFESATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKF 188
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTP-SDLDGVLLVLINALYFKGNWRVKF 692
IN +V AT I E++ P S V+ NA+YFKG W F
Sbjct: 62 INAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPF 105
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 555 ATAINDFVRLATHEAIDEIVTPSDL-DGVLLVLINALYFKGNWRVKF 692
A +N F+ AT+ ++ ++P VL NA++FK W KF
Sbjct: 120 AAEVNRFISQATNGRLNNTISPGTFGSSTKCVLANAMHFKATWGRKF 166
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 390 LKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLSVFRLTRVTSSSV 211
L+Y + H C L +R+ S+ D+ + A SPDVTK +++ RL T+ ++
Sbjct: 586 LRYLDISHSCVKELPEKF--WRLYSLQVVDARRSSLRAISPDVTKLINLRRLALPTNCAL 643
Query: 210 KL 205
KL
Sbjct: 644 KL 645
>07_03_1547 + 27623945-27625612
Length = 555
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 181 HIFEEVIVQLY---R*TCDSSQSKNGKPFRHIRTISMDDYIGAI 303
H F EVI L T D ++ GK RH RT+ D Y G I
Sbjct: 285 HCFPEVIAGLRIHGELTVDPEKTPEGKSIRHFRTLLDDAYRGRI 328
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 635 PIQITWCYYLIYSFVSCQSNEIIYSS 558
P+ I W YYLI + ++N I+ S
Sbjct: 81 PLTIKWYYYLILGIIDVEANYIVVKS 106
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 371 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 493
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 285 FDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAED 326
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 564 INDFVRLATHEAIDEIVTPSDLD-GVLLVLINALYFKGNW 680
IN +V+ +T + ++ +D LVL +ALYF+G W
Sbjct: 146 INSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRW 185
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 371 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 493
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 299 FDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAED 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,498
Number of Sequences: 37544
Number of extensions: 326933
Number of successful extensions: 784
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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