Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H09
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   0.76 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    23   4.1  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   4.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    23   4.1  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    23   4.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    23   7.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    22   9.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      22   9.4  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 24  SIYLIPVQCLLTNTLGVIASKSFISVIKTRVCAPPSLSIPQTHSPAPSP 170
           S+YL+  +       G I S+S  +V+ T   + PSLSIP       SP
Sbjct: 626 SVYLLSSEN--AKDTGDIKSESIDAVLPTLETSSPSLSIPTDFQKEASP 672


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 42  VQCLLTNTLGVIASKSFISVIKTRVCAPPSLSIPQTH 152
           +Q    N  G +  K F+S I  +   P  LS   TH
Sbjct: 38  IQLFSGNESGSLMQKCFVSKIPNKSLLPTELSKISTH 74


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 11  LLCQIYLFDTC 43
           LLC  Y+FDTC
Sbjct: 319 LLCCYYIFDTC 329


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 130 LGGAQTLVLMTEIKLLEAITPNVLVSKHCTG 38
           +  ++ +V  T    ++AI P+VL S H TG
Sbjct: 116 IAASKAIVRCTTPYAVKAIVPSVLESIHTTG 146


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 52  C*LIHWELLLPKVLSLSSRQEFVHHQVY 135
           C L H++L +P + +LSS  +   + +Y
Sbjct: 155 CCLKHYDLCIPVICTLSSNPKSAKYLLY 182


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 35  DTCTMLAD*YIGSYCFQKF 91
           D C +L D  +GS+C  +F
Sbjct: 294 DACRILIDNQVGSFCKWQF 312


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 PQTHSPAPSP 170
           PQTH+P P P
Sbjct: 516 PQTHTPVPIP 525


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 116 NSCLDDRDKTFGS 78
           + C++DR KTF S
Sbjct: 165 HDCIEDRQKTFAS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,436
Number of Sequences: 5004
Number of extensions: 11741
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)