Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H09
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0051 + 11902322-11903125                                         28   1.2  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     27   1.6  
12_02_0674 - 21745321-21746223,21746229-21747608                       27   2.8  
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888     26   5.0  
02_05_0883 - 32481502-32483085                                         26   5.0  
12_01_0293 - 2215228-2215263,2215524-2215639,2215778-2215898,221...    25   6.6  
07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432     25   8.7  
02_04_0468 - 23172561-23174201                                         25   8.7  

>09_03_0051 + 11902322-11903125
          Length = 267

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 105 KTRVCAPPSLSIPQTHSPAPSP 170
           ++ V APP+ S PQT +P P P
Sbjct: 97  RSPVAAPPAASEPQTPTPPPRP 118


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  SVIKTRVCAPPSLSIPQTHSPAPSP 170
           +V+  R  +PP  SIP + SPAP P
Sbjct: 34  TVLPARPPSPPRASIPVSTSPAPLP 58


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 39  PVQCLLTNTLGVIASKSFISVIKTR----VCAPPSLSIPQTHSPAPSP 170
           P+ C  TNT   + S S  +  K        APP L  P+  +P+PSP
Sbjct: 394 PIDCR-TNTCSALPSSSKPAPKKITPTPPTLAPPPLISPKEETPSPSP 440


>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 128 WWCTNSCLD 102
           WWCT  CLD
Sbjct: 84  WWCTERCLD 92


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 114 VCAPPSLSIPQ-THSPAPSP 170
           V APPSL++PQ   +P P P
Sbjct: 37  VVAPPSLALPQPPQNPTPKP 56


>12_01_0293 -
           2215228-2215263,2215524-2215639,2215778-2215898,
           2216024-2216264,2218162-2218364
          Length = 238

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   QGYCVKSIYLIPVQCLLTNTLGVIASKSFISVIKTRVCAPPS 131
           +G C KS+   P  C  +N LGV   K + +  K +V A P+
Sbjct: 176 KGSCGKSLAPFPQGCFYSNALGVGGLKCYENP-KHKVTAVPA 216


>07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432
          Length = 996

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 91  KLLEAITPNVLVSKHCTGIK*IDLTQ 14
           +L++A+  N+  S HC GI+ + L Q
Sbjct: 897 RLVDALNANMKPSAHCPGIRRVILEQ 922


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 172 FGLGAGE*VCGIDKLGGAQTLVLMTEIKLLEAITP 68
           FG+ AG    G+  +  A+   L TE+ LL  +TP
Sbjct: 209 FGVDAGCLADGLPDVPFARAFELATELSLLRFVTP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,841,555
Number of Sequences: 37544
Number of extensions: 80052
Number of successful extensions: 340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)