Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H09
         (172 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126171-1|AAI26172.1| 1119|Homo sapiens leucine-rich repeats an...    28   6.2  
BC126169-1|AAI26170.1| 1119|Homo sapiens leucine-rich repeats an...    28   6.2  
AY505340-1|AAR98629.1| 1119|Homo sapiens leucine-rich and immuno...    28   6.2  
AY358295-1|AAQ88662.1| 1059|Homo sapiens SAPS287 protein.              28   6.2  
AY358288-1|AAQ88655.1| 1119|Homo sapiens SAPS287 protein.              28   6.2  
AK074921-1|BAC11295.1|  697|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AK126510-1|BAC86575.1|  213|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AB209718-1|BAD92955.1|  518|Homo sapiens Dematin variant protein.      27   8.3  

>BC126171-1|AAI26172.1| 1119|Homo sapiens leucine-rich repeats and
           immunoglobulin-like domains 3 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 767 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 798


>BC126169-1|AAI26170.1| 1119|Homo sapiens leucine-rich repeats and
           immunoglobulin-like domains 3 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 767 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 798


>AY505340-1|AAR98629.1| 1119|Homo sapiens leucine-rich and
           immunoglobulin-like domains 3 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 767 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 798


>AY358295-1|AAQ88662.1| 1059|Homo sapiens SAPS287 protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 707 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 738


>AY358288-1|AAQ88655.1| 1119|Homo sapiens SAPS287 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 767 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 798


>AK074921-1|BAC11295.1|  697|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90440 fis, clone NT2RP3000921, weakly similar to
           TUMOR SUPPRESSOR PROTEIN DCC PRECURSOR. ).
          Length = 697

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  CLLTNTLGVIASKSFISVIKTRVCAPPSLSIP 143
           C ++NTLG       +SVI T  C  P ++ P
Sbjct: 345 CEMSNTLGTERGNVRLSVIPTPTCDSPQMTAP 376


>AK126510-1|BAC86575.1|  213|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44546 fis, clone UTERU3006008. ).
          Length = 213

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 123 PPSLSIPQTHSPAP 164
           PP+ SIP THSP P
Sbjct: 146 PPTPSIPSTHSPTP 159


>AB209718-1|BAD92955.1|  518|Homo sapiens Dematin variant protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 39  PVQCLLTNTLGVIASKSFISVIKTRVCAPPSLSIPQTHSPAPSP 170
           P+Q  LT+     ASK F   ++        + +P TH P P P
Sbjct: 394 PLQLALTSARKPRASKPFAPALRLPQKPGLRVEMPPTHDPGPPP 437


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,402,475
Number of Sequences: 237096
Number of extensions: 445094
Number of successful extensions: 1382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 76,859,062
effective HSP length: 36
effective length of database: 68,323,606
effective search space used: 1366472120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)