Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H09
         (172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF016418-6|AAK18899.1|  248|Caenorhabditis elegans Hypothetical ...    26   3.1  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    25   7.2  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    25   7.2  
AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    25   7.2  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF024494-6|AAB70330.1|  135|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 68  GSYCFQKFYLCHQDKSLCTTKFI 136
           G+  ++K +LCHQ +S+C + FI
Sbjct: 285 GNIDYKKMFLCHQFQSVCFSIFI 307


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  Y  D+ ++ +D     +C   FY   Q KS C T
Sbjct: 115 CTSYNADSSSLCSDWAANGFCTNAFYTSAQRKSYCAT 151


>Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical
           protein F35E8.9 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 11  LLCQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           L C  Y+ D+ T      +  +C   FY   Q +S C +
Sbjct: 205 LTCSSYIADSSTACRAWSLNGFCTNTFYTLAQRRSYCAS 243


>AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical
           protein C49G7.3 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  YLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           Y+ D+ T  A   +  +C   FY   Q +S C T
Sbjct: 210 YIADSSTACAAWKLNGFCTNTFYTAAQRRSYCAT 243


>AF016418-6|AAK18899.1|  248|Caenorhabditis elegans Hypothetical
           protein C49G7.4 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  YLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           Y+ D+ T  A   +  +C   FY   Q +S C T
Sbjct: 210 YIADSSTACAAWKLNGFCTNTFYTAAQRRSYCAT 243


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 75  IASKSFISVIKTRVCAPPSLSIPQTHSPAPSP 170
           IASK+ ++   +R   PPS S   + S +P+P
Sbjct: 274 IASKTSVAPTSSRAPLPPSSSFAPSISASPAP 305


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 75  IASKSFISVIKTRVCAPPSLSIPQTHSPAPSP 170
           IASK+ ++   +R   PPS S   + S +P+P
Sbjct: 276 IASKTSVAPTSSRAPLPPSSSFAPSISASPAP 307


>Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK218.5 protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  Y  D+    A   +  +C   FY   Q KS C T
Sbjct: 208 CSTYNRDSSNACAAWAVNGFCQNNFYTPVQRKSYCAT 244


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  ++ D+ T      +  +C   FY   Q +S C T
Sbjct: 204 CTSFISDSSTACRAWSLNGFCTNTFYTAAQRRSYCAT 240


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 56  D*YIGSYCFQKFYLCHQDKSLCTTKFINTTNSF 154
           D Y GSYC +    C  +K    +K IN  NS+
Sbjct: 277 DGYSGSYCQEGKDNCVNNKCEAGSKCINGVNSY 309


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 56  D*YIGSYCFQKFYLCHQDKSLCTTKFINTTNSF 154
           D Y GSYC +    C  +K    +K IN  NS+
Sbjct: 277 DGYSGSYCQEGKDNCVNNKCEAGSKCINGVNSY 309


>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 130 LGGAQTLVLMTEIKLLEAITPNVLVSKHCTGIK*IDLTQ 14
           +G A    LM  IKLL A  PN+ +  H T  + +D +Q
Sbjct: 117 IGFATQFPLM--IKLLSAFPPNIELGLHATNPQPLDSSQ 153


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 62  YIGSYC---FQKFYLCHQDKSLCTTKFINTTNS 151
           +I  +C   FQK   C+  + LC ++F+N + +
Sbjct: 247 FICEFCQMPFQKETTCYIHQKLCKSRFVNVSTT 279


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 62  YIGSYC---FQKFYLCHQDKSLCTTKFINTTNS 151
           +I  +C   FQK   C+  + LC ++F+N + +
Sbjct: 250 FICEFCQMPFQKETTCYIHQKLCKSRFVNVSTT 282


>AF024494-6|AAB70330.1|  135|Caenorhabditis elegans Hypothetical
           protein C38C3.6 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 117 CAPPSLSIPQTHSPAPSP 170
           C PP+  +P T  P P P
Sbjct: 92  CYPPNFIVPPTEPPPPYP 109


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  Y+ D+ +  A      +C   FY   Q +S C T
Sbjct: 209 CTSYIADSSSNCAAWSTNGFCTNTFYTVAQRRSRCAT 245


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  Y+ D+ +  A      +C   FY   Q +S C T
Sbjct: 209 CTSYIADSSSNCASWSRNGFCTNTFYTVAQRRSRCAT 245


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 17  CQIYLFDTCTMLAD*YIGSYCFQKFYLCHQDKSLCTT 127
           C  Y+ D+ +  A      +C   FY   Q +S C T
Sbjct: 271 CTSYIADSSSNCAAWSTNGFCTNTFYTVAQRRSRCAT 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,165,987
Number of Sequences: 27780
Number of extensions: 68808
Number of successful extensions: 297
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)