Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H08
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   226   3e-60
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    55   1e-08
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.3  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   5.8  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  226 bits (552), Expect = 3e-60
 Identities = 106/185 (57%), Positives = 138/185 (74%)
 Frame = +1

Query: 121 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 300
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 301 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 480
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 481 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 660
           + P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187

Query: 661 KQVYD 675
             +YD
Sbjct: 188 LTIYD 192


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
 Frame = +1

Query: 91  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 270
           K G E KA      F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  
Sbjct: 17  KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71

Query: 271 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 441
           +M KA+    E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130

Query: 442 APLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKP 582
           AP + VIPA       G  P +             + L +PT +  G + ++ D  +   
Sbjct: 131 APFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTE 190

Query: 583 GDKVGASEATLLNMLNI--SPFSYGLV 657
           G ++ + +  LL +  I  + F  GL+
Sbjct: 191 GQQLDSRQTRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 557 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 432
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 668 TCLTTRPYEKGEMFNMLRRVASEAP 594
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  HEAQRSVRICLVLKFLRSPYFTQSKMGREDKATWKSNYFV 138
           +E QR + +C V      PYF++  +   D A W   +FV
Sbjct: 14  YENQRGIMLCGV------PYFSEKSLLNFDPAPWVDQHFV 47


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  PYFTQSKMGREDKATWKSNY 132
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 32   GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 124
            GLC   + L+   +  ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,501
Number of Sequences: 5004
Number of extensions: 67863
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)