Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H07
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...    93   3e-21
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...    93   3e-21
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   0.77 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   3.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   4.1  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    23   5.4  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    23   7.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    23   7.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    22   9.5  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    22   9.5  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    22   9.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    22   9.5  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 3e-21
 Identities = 40/59 (67%), Positives = 52/59 (88%)
 Frame = +1

Query: 52  FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPEL 228
           +R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+L
Sbjct: 13  YRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 93.5 bits (222), Expect = 3e-21
 Identities = 40/59 (67%), Positives = 52/59 (88%)
 Frame = +1

Query: 52  FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPEL 228
           +R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+L
Sbjct: 13  YRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 153 SSEQVTSCWFW 185
           SS ++T CWFW
Sbjct: 366 SSNEITHCWFW 376


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 131 ITYRFFAPVLSAQLITAPTGRPSEMR 54
           + Y F  P+LS QL T P  +P+ +R
Sbjct: 80  VAYSFSDPILSTQLRTPPP-QPTSIR 104


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -2

Query: 206 TVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPR 27
           +V T   P+P A      P++P     ++  A  ++ ++ +AP    + +   AP+ P R
Sbjct: 508 SVITPSVPQPPAA-----PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQR 562

Query: 26  PLLDILP 6
           P + ++P
Sbjct: 563 PAVPVVP 569


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 11  KCLK-EDVVVPRERSSASRWVSQWEL 85
           +C+K E+  +  E   A  W+++WEL
Sbjct: 499 QCIKTEETEISPETIKARIWLARWEL 524


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/43 (27%), Positives = 14/43 (32%)
 Frame = -2

Query: 206 TVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAP 78
           T    + PE   G  F      C AI  R F P      +  P
Sbjct: 115 TALQFLKPEQTIGGKFPYVFSECQAIHARSFIPCQDTPSVKVP 157


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 11  KCLKEDVVVPRERSSA-SRWVSQWEL*SIVQIIQEQK 118
           KC+K    +  E  +    W+SQW+   + +++ E+K
Sbjct: 308 KCMKNFANLKVESMNVFDLWLSQWKRTLLEKVVTEEK 344


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 158 RRPLIPCTAITYRFFAPVLS 99
           R P+ P T + YR+F  V S
Sbjct: 110 RNPMAPTTHLNYRYFELVNS 129


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 223 LVCLS*LWPQSCHQNQQLVTCSDDP 149
           ++CL  L    CHQ+QQ       P
Sbjct: 531 VICLERLVDLVCHQDQQATQTPQSP 555


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 223 LVCLS*LWPQSCHQNQQLVTCSDDP*YLV 137
           +VC+S  W  +C+ ++ LV   D+  YLV
Sbjct: 226 IVCVSPKWVLACYSSKYLV---DEEMYLV 251


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +1

Query: 58  ISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKK 213
           ++ G    AVI      G KN+  ++V   +  L R       + ++  V K
Sbjct: 114 MATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPGVEFVIGAVDK 165


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  TWWFRGSEVPHLAGSPSGSCDQLCR 101
           T+W+  + +  L   P  SC ++C+
Sbjct: 93  TFWYLQAHMVDLGLQPHSSCFKICK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,430
Number of Sequences: 5004
Number of extensions: 18590
Number of successful extensions: 49
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)