Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H06
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   212   4e-56
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    32   0.054
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    29   0.51 
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    28   0.89 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    28   1.2  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   2.0  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    25   6.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   6.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.3  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  212 bits (517), Expect = 4e-56
 Identities = 98/184 (53%), Positives = 134/184 (72%), Gaps = 1/184 (0%)
 Frame = +1

Query: 40  MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIYNKERRNEKIQ 219
           MPQNEYIE   + +GRR D+                      RGIKAK+Y ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 220 MKKKIKAHEEKNVKQN-TEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 396
           MKK IK HEE+N  Q  ++  ++GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 397 IPKVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTYVGENFTRKPPKFDRFIRPMALRFKK 576
           +P+VR  A+ E+FKV+++GK+K+ +WKRM+TK T+VG+ FTR+P K++RFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180

Query: 577 AHVT 588
           A+VT
Sbjct: 181 ANVT 184


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 426 SVSLCSDLW-YWYIPFTGFLFTFLFNHIRQDFGTRLDISVK*VDRQSPFGDLFSVLFDI 253
           S ++C  LW + Y PFT FL   +F+H+ +D     DI VK VDR       F  + DI
Sbjct: 497 SKNICY-LWLFLYCPFTPFLT--VFSHLLEDDDLDADICVKDVDRLYSIHAFFLKMKDI 552


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 22/84 (26%), Positives = 46/84 (54%)
 Frame = +1

Query: 196 ERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 375
           E+ + K+++ ++     +K +++ TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 376 AGKWDVPIPKVRAQADAEVFKVLQ 447
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 412  AQADAEVFKVLQSGKTKRKAWKRMVTKVTYVGENFTRKPPKFDRFI 549
            A  +++  K+L +   K+   KR+V+++T +  N T    + DR++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +1

Query: 184 IYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLD-------RDVQSRAKVL 342
           +Y+ +++    +  KK+KAH++K   +  E  +E A  V   D       +DV++ A   
Sbjct: 48  VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107

Query: 343 SNMIKQKRKEKAGK 384
           +   K+K+ +K  K
Sbjct: 108 AAAKKKKKNKKKVK 121


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 265 NTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 399
           N  K SE    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 196 ERRNEKIQMKKKIKAHEEKNVKQNTEKVS 282
           E + + + M K+ +   EKN  Q+TEK S
Sbjct: 52  ECKRQMLDMTKRYRIAPEKNTDQDTEKPS 80


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 181 KIYNKERR-NEKIQMKKKIKAHEEKNVKQNTEKVSEGALPV 300
           K+ N E + NE  + + +  ++ E+N  +NTE+++E + P+
Sbjct: 93  KLENFENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 40  MPQNEYIERHQKL 78
           +PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 534 LWWFTCKVLSYICDFCNHAFPSFPLCFTRL*HFEYFSVSLCSDL 403
           L W TC  LSY+     +AF S  +CF +      F +S  S L
Sbjct: 261 LLWLTCAFLSYMAQ--GNAFRSL-VCFIQRGGIREFFISQSSSL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,355
Number of Sequences: 5004
Number of extensions: 46711
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)