Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H06
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 218 3e-57
04_01_0596 - 7852529-7855185,7855545-7855581 31 0.69
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 31 0.91
01_05_0227 - 19512866-19514983 30 1.2
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 2.8
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 29 2.8
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 3.7
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 3.7
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 3.7
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 29 3.7
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 28 6.4
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 28 6.4
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 218 bits (532), Expect = 3e-57
Identities = 105/182 (57%), Positives = 123/182 (67%)
Frame = +1
Query: 43 PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIYNKERRNEKIQM 222
PQ ++IE HQK +GRRLDY L G K K + K+R EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392
Query: 223 KKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 402
KK +K H+E +Q + V EGALP YLLDRD RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452
Query: 403 KVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTYVGENFTRKPPKFDRFIRPMALRFKKAH 582
KVR A+ E+FKVL++GK K K WKRMVTK T+VG FTRKPPK++RFIRP LRF KAH
Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAH 512
Query: 583 VT 588
VT
Sbjct: 513 VT 514
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 455 LPDCNTLNTSASACAL--TFGIGTSHLPAFSLRFCLIILD 342
LP+C T+ + SACA F GT + A+SL+ CL+ LD
Sbjct: 405 LPNCVTIISVLSACASLGAFSQGT-EIHAYSLKNCLLTLD 443
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 349 Y*TRLWHATGHLCQVGRQAEPLRRPFQC 266
Y T +W +CQ RQ +PLR F C
Sbjct: 329 YWTTIWGRVSFVCQYIRQQQPLRHGFSC 356
>01_05_0227 - 19512866-19514983
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 492 FCNHAFPSFPLCFTRL*HFEYFSVSLCSDL 403
FC AF P C T L H +Y +S C++L
Sbjct: 549 FCT-AFKHLPQCITLLGHLQYVDLSCCTEL 577
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 29.1 bits (62), Expect = 2.8
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKKI--KAHEEKNVKQNTEKVSEGALPVYLLD-RDVQSRAKVLS 345
K K KE+ EK K+ K EEK V+ KV LP ++ + ++ +R +
Sbjct: 380 KKKKKKKEKEKEKKAAAKEADAKKEEEKAVEAPKGKVDMKKLPKHVREMQEALARRQEAE 439
Query: 346 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTYVGENFTRK 525
K++ +E+ K + + R + + E K ++ + K++ K + K G+ T K
Sbjct: 440 ERKKREEEERLRKEE----EERLKKEEEERKAEEAKRRKKEREKEKLLKKKQEGKLLTGK 495
Query: 526 PPKFDRFIRPMALRF 570
+ + + M +F
Sbjct: 496 QKEEAKRLEAMRRQF 510
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +1
Query: 277 VSEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 444
V+ GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 445 QSGKTKRKAWKRMVTKVTYVGENFTRKPPKFD 540
+ + R + T VT + K P+++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQYN 292
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 268 TEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 429
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 455 LPDCNTLNTSASACAL--TFGIGTSHLPAFSLRFCLIILD 342
LP+C T+ + SACA F G + A+SL+ CL+ LD
Sbjct: 513 LPNCVTIISVLSACASLGAFSQG-MEIHAYSLKNCLLTLD 551
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 292 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLQSG 453
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = +1
Query: 193 KERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 372
K+R EK K + +++ K+N K S G Y RD + A K+
Sbjct: 252 KDREREKKDYDSKHERYDDGGAKKNGSKASRGEEDGYSYKRDTEINASATKEKYNNTEKD 311
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 163 LRGIKAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSR 330
L+ + A +E+ K++ +KK A +EK+ + + VS L+D Q++
Sbjct: 624 LKRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTVLVDPPNQNQ 679
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 38 QCRRTNILNAIKSFTADGLIMRRGNAKKKRVNPIRGLRRLVNYEVL 175
Q R N+ N +K+FT ++++ + PI+ R + ++ L
Sbjct: 339 QARGENLFNLVKAFTNSPMLLKENKRSNEAAMPIKDDLRAIFFDYL 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,302
Number of Sequences: 37544
Number of extensions: 281291
Number of successful extensions: 822
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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