Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H05
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0179 + 14801037-14801108,14801325-14802788                       30   0.48 
09_01_0069 - 1010888-1011226,1011412-1011600                           27   3.4  
01_01_1080 + 8495480-8495851                                           27   3.4  

>07_03_0179 + 14801037-14801108,14801325-14802788
          Length = 511

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 100 SDLPYGPPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEK 255
           +DLP   P+ + PL    R++FL   +        +LSK+ETA R +   EK
Sbjct: 389 TDLPSRAPIELKPLPSGLRYAFLNGDVESPVIISDKLSKEETA-RLIAVLEK 439


>09_01_0069 - 1010888-1011226,1011412-1011600
          Length = 175

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 243 FDFPEGSLLFRQPALVKCPVKNACS*EGPASKP 145
           F+FP  + +F  P ++ CP    C  + P S P
Sbjct: 97  FNFPNMTTIFNLPKIIPCPY--VCQSKSPPSNP 127


>01_01_1080 + 8495480-8495851
          Length = 123

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 243 FDFPEGSLLFRQPALVKCPVKNAC 172
           F+FP  +++F  P ++ CP    C
Sbjct: 46  FNFPNMTIIFNLPKIISCPCPYVC 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,789,033
Number of Sequences: 37544
Number of extensions: 172366
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)