Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H05
         (361 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D50371-1|BAA23322.1|   69|Homo sapiens ATP synthase subunit e pr...    46   4e-05
BT006922-1|AAP35568.1|   69|Homo sapiens ATP synthase, H+ transp...    46   4e-05
BC105610-1|AAI05611.1|   69|Homo sapiens ATP synthase, H+ transp...    46   4e-05
BC003679-1|AAH03679.1|   69|Homo sapiens ATP synthase, H+ transp...    46   4e-05

>D50371-1|BAA23322.1|   69|Homo sapiens ATP synthase subunit e
           protein.
          Length = 69

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +1

Query: 118 PPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEKVIRD 267
           PPV+VSPLI+ GR+S L  G+ YGA   + L  +    R + A+EK  +D
Sbjct: 3   PPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQD 52


>BT006922-1|AAP35568.1|   69|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit e
           protein.
          Length = 69

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +1

Query: 118 PPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEKVIRD 267
           PPV+VSPLI+ GR+S L  G+ YGA   + L  +    R + A+EK  +D
Sbjct: 3   PPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQD 52


>BC105610-1|AAI05611.1|   69|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit E
           protein.
          Length = 69

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +1

Query: 118 PPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEKVIRD 267
           PPV+VSPLI+ GR+S L  G+ YGA   + L  +    R + A+EK  +D
Sbjct: 3   PPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQD 52


>BC003679-1|AAH03679.1|   69|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit E
           protein.
          Length = 69

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +1

Query: 118 PPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEKVIRD 267
           PPV+VSPLI+ GR+S L  G+ YGA   + L  +    R + A+EK  +D
Sbjct: 3   PPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQD 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,948,748
Number of Sequences: 237096
Number of extensions: 1005863
Number of successful extensions: 1217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)