Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H05
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical pr...    42   2e-04
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical ...    27   5.2  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    26   6.9  
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    26   9.1  
U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    26   9.1  

>Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical
           protein R04F11.2 protein.
          Length = 107

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = +1

Query: 118 PPVRVSPLIRFGRWSFLTAGILYGAFHQSRLSKKETAFREVEAKEKV 258
           P V +SPLIRFGR++ L+ G++YG F   ++ +     RE + ++ V
Sbjct: 16  PTVTISPLIRFGRYAALSLGVVYGFFRLRQIREYHADIREWDHEKAV 62


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 303 SSCNSLLLFKLGISDYFLLSFDFPEGSLLF 214
           SSC +L++    +  Y  LSFDF + +LL+
Sbjct: 370 SSCRALIISDFLLKSYHSLSFDFGDENLLY 399


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 303 SSCNSLLLFKLGISDYFLLSFDFPEGSLLF 214
           SSC +L++    +  Y  LSFDF + +LL+
Sbjct: 370 SSCRALIISDFLLKSYHSLSFDFGDENLLY 399


>AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical
           protein C49A9.3 protein.
          Length = 573

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 170 LQAFFTGHFTRAGCLKRRLPSGKSKL 247
           +  F T HF + GCL + +P G  K+
Sbjct: 102 ISVFNTKHFGQVGCLDQNIPFGIHKI 127


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 285 LLFKLGISDYFLLSFDFPEGSLLF 214
           LL+ L +SD FLL F  P  S+++
Sbjct: 122 LLYSLSVSDIFLLVFALPLFSIMY 145


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 AFHQSRLSKKETAFREVEAKEK 255
           A H+  L KKE   RE +AKEK
Sbjct: 264 AHHKEWLQKKEREIREKKAKEK 285


>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 17  EKILGTYK*ILFGFCI--PLQL*INYLLQCLIYLMDLQCVCHL*SGLDAGP 163
           +K+ GTY+ ++F F +   +   I  L Q +I++    CV  + S L   P
Sbjct: 31  KKLFGTYRNVMFSFAVYFSVYAWIEILAQPIIHIKSPACVVFMESPLKYYP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,967
Number of Sequences: 27780
Number of extensions: 146463
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)