Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H04
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    28   0.50 
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   6.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    24   8.2  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 43  VKNIKIRTIMSTNENNSEVAVDKVNDE 123
           +K+  ++T  STNE  S +AVD +N++
Sbjct: 432 IKHTVVKTFRSTNEQLSLIAVDALNND 458


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 61  RTIMSTNENNSEVAVDKVNDESKGDAKSDL 150
           +T+ STN   SE+ + K +  S  D  SD+
Sbjct: 142 KTLQSTNLKGSEIQISKKSPPSLFDRISDM 171


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 22  WKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESKGDAKSD 147
           W +LIL +   +  T   T++  SE   ++V+DE     K+D
Sbjct: 344 WLILILRI-GYRAFTTNDTHDERSEDEDEEVSDEKSSAKKND 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,933
Number of Sequences: 5004
Number of extensions: 5161
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)