Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H04
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical ...    27   5.2  
AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical ...    27   5.2  

>AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   ARGSGQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESK 129
           AR  GQP   L    ++ K  TI   N+N  +  +D  +++SK
Sbjct: 350 ARVKGQPTTPLSKYTRSTKNSTIRDANKNGEKRGIDGNDNDSK 392


>AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   ARGSGQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESK 129
           AR  GQP   L    ++ K  TI   N+N  +  +D  +++SK
Sbjct: 350 ARVKGQPTTPLSKYTRSTKNSTIRDANKNGEKRGIDGNDNDSK 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,282
Number of Sequences: 27780
Number of extensions: 29436
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)