Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H02
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   7.9  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   7.9  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   7.9  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 238  VRFRVIAYQNCLHVAGRANTGQGPQFDDHCPSRTVAILLELS 363
            V + V AY NC+H     NTG+ P F  H   R V   LE+S
Sbjct: 1747 VVYAVYAYNNCVH----ENTGETPMFLMH--GRDVMGPLEMS 1782


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 238  VRFRVIAYQNCLHVAGRANTGQGPQFDDHCPSRTVAILLELS 363
            V + V AY NC+H     NTG+ P F  H   R V   LE+S
Sbjct: 1650 VVYAVYAYNNCVH----ENTGETPMFLMH--GRDVMGPLEMS 1685


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 238  VRFRVIAYQNCLHVAGRANTGQGPQFDDHCPSRTVAILLELS 363
            V + V AY NC+H     NTG+ P F  H   R V   LE+S
Sbjct: 1661 VVYAVYAYNNCVH----ENTGETPMFLMH--GRDVMGPLEMS 1696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,661
Number of Sequences: 27780
Number of extensions: 153077
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)