Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H01
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 98 4e-21
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 54 2e-12
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 68 4e-12
06_01_0671 - 4899611-4899829,4900870-4901448 65 3e-11
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 61 7e-10
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 1.9
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 28 4.4
06_03_0630 + 22926652-22928133 28 4.4
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 28 4.4
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 28 4.4
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 28 5.8
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 28 5.8
01_06_1548 + 38157796-38157955,38158771-38159252 28 5.8
02_03_0183 + 16106205-16106474 27 7.6
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +2
Query: 302 FTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 481
F+HLAW+ T RK GGLG + P+ISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 482 ITVNDLAVGRSVEETLRLVHAFQF 553
T+N+LA+GRSV+ET+R + A Q+
Sbjct: 272 STINNLAIGRSVDETMRTLQALQY 295
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 FKTTAVVNGEFKDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVI 280
F AV + EF +V LSD+ GK YV+LFFYPLDFTFVCPTEI AFS+R D+F K+ E++
Sbjct: 77 FDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEIL 136
Query: 281 AASTDS 298
S DS
Sbjct: 137 GVSIDS 142
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 54.4 bits (125), Expect(2) = 2e-12
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +2
Query: 407 GVLDEETGIPFRGLFIIDDKQNLRQITVNDLAVGRSVEETLRLVHAFQF 553
GV + GI RGLFIID + ++ T+N+LA+GRSV+ETLR + A Q+
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 121
Score = 35.1 bits (77), Expect(2) = 2e-12
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 206 FVCPTEIIAFSERADDFRKIGCEVIAASTDS 298
FV EI AFS+R ++F KI EV+ S DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 68.1 bits (159), Expect = 4e-12
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Frame = +2
Query: 143 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAW 319
+ + DF G YV+LF +P DFT VC TE+ A + A +F K G +++ S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 320 INTSRKQGGLGPMNIPIISDKSHRISRDYGVLD----EETG--IPFRGLFIIDDKQNLRQ 481
I + PI++D S + ++D + G +P R L I+ + ++
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 482 ITVNDLAVGRSVEETLRLVHAFQ 550
+ VGR+++E +R V A Q
Sbjct: 177 SFLYPACVGRNMDEVVRAVDALQ 199
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 65.3 bits (152), Expect = 3e-11
Identities = 41/135 (30%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +2
Query: 143 VALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAWI 322
V+LS FKG+ VV++FYP D T C + AF + + F+K G EVI S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 323 NTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITVNDL 499
+K+ L P ++SD+ +++ +++GV + G +P R +++D ++ I N
Sbjct: 196 ---KKKYKL-PFT--LLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNNQF 249
Query: 500 AVGRSVEETLRLVHA 544
+ + ETL+++ +
Sbjct: 250 QPEKHIGETLKILQS 264
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 60.9 bits (141), Expect = 7e-10
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Frame = +2
Query: 143 VALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAW 319
+ L DF G YV++F +P DFT VC TE+ + A +F K G +++ S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 320 INTSRKQGGLGPMNIPIISDKSHRISRDYGVLD---EETG---IPFRGLFIIDDKQNLRQ 481
I + PI++D R ++D ++T +P R L I+ + ++
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVKL 141
Query: 482 ITVNDLAVGRSVEETLRLVHA 544
+ GR++ E LR A
Sbjct: 142 SFLFPACTGRNMAEVLRATDA 162
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 329 SRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 475
++K+ G G N+P D R ++DY +DE+ +P F I D++ +
Sbjct: 64 AKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGM 112
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = -3
Query: 364 YVHGTETALFTGGVDPSQVGEVR--VRGGGDHLAPDLTEVISSLRESDYLCRAYE---RE 200
Y+ +T L P+ G ++ V+ +L L VIS++R + C A+E +
Sbjct: 443 YILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGHVISTIRSAIANCDAFESIAEQ 502
Query: 199 IK--RIEE*HDVFPLKIREGDVFELSVDDG 116
+K R+EE V +K +GD + DDG
Sbjct: 503 LKKGRLEE-LAVANMKSNDGDTEMVPADDG 531
>06_03_0630 + 22926652-22928133
Length = 493
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 391 AVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGGDHLAPDLTEVIS--SLRESDYLC 218
A YY Y HG AL + DP++ VR+ G + +L +S S YL
Sbjct: 152 AAAFAVYYHYFHGHGEALASCANDPARGAVVRLPGMPFLRSDELPSAVSIVSPEHKHYLL 211
Query: 217 RAYEREI 197
A R++
Sbjct: 212 LAMLRDL 218
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 295 VRGGGDHLAPDLTEVISSLR 236
V GGGDH PDL + IS L+
Sbjct: 251 VAGGGDHGDPDLEQAISDLQ 270
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 38 ISNKLS*ISTECLCNVRPXXGQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCP 217
+ N+ S + E G F ++N + K V DF GK+ +L+F +CP
Sbjct: 163 LKNRTSAVKQEPSVGTAAIGGPFN---LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICP 219
Query: 218 TEIIAFSERADDFR-KIGCEVI 280
E+ + D + K EV+
Sbjct: 220 DELQKMALAIDKIKEKAKMEVV 241
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 301 VRVRGGGDHLAPDLTEVISSLRESDYLCRAYEREI 197
++ GGD A DL E++ L +D LC ++ +
Sbjct: 300 IKRANGGDSRAEDLREILGDLHLNDDLCNKLQKSM 334
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 472 PPPDHRQRSGGRTVSRGDPEAGPCVP 549
PPP SG V D EAGPC+P
Sbjct: 16 PPPPPPAPSGNTAVE--DSEAGPCIP 39
>01_06_1548 + 38157796-38157955,38158771-38159252
Length = 213
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 345 PPCLREVLIQAKWVKCESVEAA 280
PP R +QAKW+ C V+A+
Sbjct: 137 PPWRRPSYVQAKWLPCRGVQAS 158
>02_03_0183 + 16106205-16106474
Length = 89
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 365 PIISDKSHRISRDYGVLDEETGIP 436
P+ S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,647
Number of Sequences: 37544
Number of extensions: 258458
Number of successful extensions: 846
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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