Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_H01
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 247 5e-66
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 210 5e-55
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 59 2e-09
Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical pr... 30 0.97
Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein... 30 0.97
Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein... 30 0.97
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 30 1.3
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 3.9
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 27 6.9
Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical p... 27 9.1
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 247 bits (604), Expect = 5e-66
Identities = 115/151 (76%), Positives = 132/151 (87%)
Frame = +2
Query: 101 QFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVI 280
QFKT AVV+GEF DV+LSD+KGKYVVLFFYPLDFTFVCPTEIIAFS+RA++F+ I V+
Sbjct: 12 QFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAINTVVL 71
Query: 281 AASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIID 460
AASTDS F+HLAWIN RK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGLFIID
Sbjct: 72 AASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFIID 131
Query: 461 DKQNLRQITVNDLAVGRSVEETLRLVHAFQF 553
QNLRQIT+NDL VGRSV+ETLRLV AFQF
Sbjct: 132 PSQNLRQITINDLPVGRSVDETLRLVQAFQF 162
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 210 bits (513), Expect = 5e-55
Identities = 91/150 (60%), Positives = 124/150 (82%)
Frame = +2
Query: 104 FKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 283
FK TAVV+G+FK ++ D+KGK++V+FFYPLDFTFVCPTEIIA+ +RA++FR +G EV+A
Sbjct: 42 FKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVA 101
Query: 284 ASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDD 463
S DSHF+HLAW+NT RK GGLG M+IP+++D + +I+ +GVLD+E+G+ +RGLF+ID
Sbjct: 102 CSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDP 161
Query: 464 KQNLRQITVNDLAVGRSVEETLRLVHAFQF 553
+R T NDL VGRSV+ETLR++ AFQF
Sbjct: 162 SGTVRHTTCNDLPVGRSVDETLRVLKAFQF 191
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 59.3 bits (137), Expect = 2e-09
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Frame = +2
Query: 137 KDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHL 313
K+ L ++ G+ +++LF +P DFT VC TE+ + A +FRK +++A S DS TH
Sbjct: 18 KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77
Query: 314 AW---INTSRKQGGLGP-MNIPIISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 463
W IN+ + G + II+D I + G++D E + R + +
Sbjct: 78 DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137
Query: 464 KQNLRQITVNDLAVGRSVEETLRLVHAFQ 550
+ L+ + GR+ E LR+V Q
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQ 166
>Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical
protein M106.5 protein.
Length = 270
Score = 30.3 bits (65), Expect = 0.97
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = +2
Query: 89 PXXGQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKI- 265
P + K N F+ F+G ++F+ LD I+ + D + I
Sbjct: 89 PSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNIT 146
Query: 266 GC-------EVIAASTDSHF----THLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGV 412
GC E+ + +H+ T + W+ T++ G+ MN+ + H + D +
Sbjct: 147 GCWDSIHVIEITERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPI 202
Query: 413 LDEETGIPFRGLFIIDDKQNLRQITVNDLAVGRS 514
D+ T + G I D + +R +T+N++ G++
Sbjct: 203 NDQNTHLANMGRMIEDQESKMR-LTINEIYFGKT 235
>Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 30.3 bits (65), Expect = 0.97
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = +2
Query: 89 PXXGQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKI- 265
P + K N F+ F+G ++F+ LD I+ + D + I
Sbjct: 89 PSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNIT 146
Query: 266 GC-------EVIAASTDSHF----THLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGV 412
GC E+ + +H+ T + W+ T++ G+ MN+ + H + D +
Sbjct: 147 GCWDSIHVIEITERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPI 202
Query: 413 LDEETGIPFRGLFIIDDKQNLRQITVNDLAVGRS 514
D+ T + G I D + +R +T+N++ G++
Sbjct: 203 NDQNTHLANMGRMIEDQESKMR-LTINEIYFGKT 235
>Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 30.3 bits (65), Expect = 0.97
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = +2
Query: 89 PXXGQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKI- 265
P + K N F+ F+G ++F+ LD I+ + D + I
Sbjct: 89 PSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNIT 146
Query: 266 GC-------EVIAASTDSHF----THLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGV 412
GC E+ + +H+ T + W+ T++ G+ MN+ + H + D +
Sbjct: 147 GCWDSIHVIEITERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPI 202
Query: 413 LDEETGIPFRGLFIIDDKQNLRQITVNDLAVGRS 514
D+ T + G I D + +R +T+N++ G++
Sbjct: 203 NDQNTHLANMGRMIEDQESKMR-LTINEIYFGKT 235
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 454 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 281
D +S G A VE D A DAVR Y + FT GV P G ++ GG
Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGG 98
Query: 280 DHLAPD 263
DH D
Sbjct: 99 DHRGGD 104
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 215 PTEIIAFSERADDFRKIGCEV-IAASTDSHF-THLAWINTSRKQGGLGPMNIPIISDKSH 388
P E + F ER F I C++ D H+ + +A SR+Q + P + K
Sbjct: 265 PNEFVPFCERNGRFSSIQCDIQFCWCVDVHYGSEIAGTRISREQRRIDMCREPRLCTKKC 324
Query: 389 RISRDYGVLDEETGIPFRGLFIIDDKQNL 475
+G + + G P +D +N+
Sbjct: 325 HNQCTHGHVMDIFGCPIASCSCVDICRNV 353
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
protein F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 26 SFLLISNKLS*ISTECLCNVRPXXGQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFT 205
S ++ ++LS + EC + P + K+T N E + +SD K + LF Y
Sbjct: 15 SMCVLLHQLSHVHFECSFRLAPRASKEKSTVSGNAENERNMISDDKHSF-SLFIYSFISC 73
Query: 206 FVCPTEIIAF 235
F+ + I+F
Sbjct: 74 FLSISNYISF 83
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 295 VRGGGDHLAPDLTEVISSLRESDYLCRAYEREIKRIEE 182
V DH+ ++ E++ L + + R +ER I+ +EE
Sbjct: 555 VSAASDHVPQNMDELLEDLMKMKAVLRQHERRIRMLEE 592
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -3
Query: 454 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 281
D +S G A VE D A DAVR Y + FT GV P ++ GG
Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPSGRPLQDGG 98
Query: 280 DHLAPD 263
DH D
Sbjct: 99 DHRGGD 104
>Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical
protein F26E4.12 protein.
Length = 163
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 119 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 283
V N DV+LSD+KGK V++ + E D ++K G EV+A
Sbjct: 9 VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,368
Number of Sequences: 27780
Number of extensions: 205043
Number of successful extensions: 647
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -