Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_H01
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.6  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.8  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 113  TAVVNGEFKDVALSDF 160
            T +++  FKDV LSDF
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 467 QNLRQITVNDLAVGRSVEETLRLVHAFQF 553
           QN+R   V + + G+++  TL ++H +++
Sbjct: 16  QNIRGGVVRENSSGKNLTNTLNVIHKWKY 44


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 VVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 283
           V +   P++  F  P E     ERAD  R++ C++++
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLLS 50


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 VVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 283
           V +   P++  F  P E     ERAD  R++ C++++
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLLS 50


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 241 LRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDG 116
           ++ S    R Y+RE++  +     FP+K      FE  +++G
Sbjct: 288 VKNSGQWLREYDRELEDFDGRLFEFPIKFVPSYPFEEDINEG 329


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 449 FIIDDKQNLRQITVNDLAVGRSVEETLRLVHAFQ 550
           FI+  + N   +  NDL++ RS      L   FQ
Sbjct: 335 FILVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQ 368


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 PTEIIAFSERADDFRKIGCEVIA 283
           P E     ERAD  R++ C++++
Sbjct: 3   PLEHFENEERADRHRRVTCDLLS 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,406
Number of Sequences: 438
Number of extensions: 2378
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)