Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G24
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 240 FYKTELKSVDFLNTEVAANEINSWV 314
           FY+ E    DF+ T +  N I+ W+
Sbjct: 258 FYEVEGIGYDFIPTVLDRNVIDKWI 282


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 151 DSFFKDFIILSNFLLTMFLSNSNPRTEAI 65
           D +F+  + LSN   TM  +N +   EAI
Sbjct: 697 DMYFRRQVELSNMYRTMEANNYDTAEEAI 725


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +3

Query: 105 VRRKFERIIKSLKKESSEYVLNFGSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNTE 284
           ++ K +R      +E+ + + +  + I + Q  +P        QEF      +V  +   
Sbjct: 375 IKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPM--CVEAFQEFPPLGRFAVRDMRQT 432

Query: 285 VAANEINSWVSNTTQGKIPKLVD 353
           VA   I S     TQGK+ K  +
Sbjct: 433 VAVGVIKSVTFKDTQGKVTKAAE 455


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 351 RPIWVSFPV 325
           RPIW +FP+
Sbjct: 310 RPIWSNFPI 318


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 351 RPIWVSFPV 325
           RPIW +FP+
Sbjct: 310 RPIWSNFPI 318


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 219 FAAIAQEFYKTELKSVDFLNTEVAANEINS 308
           F  + +  YK E  +   + TE  +N +NS
Sbjct: 78  FGIVYKALYKGEQVAAKIIQTEKYSNMLNS 107


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 377 CVDYKHPVFQRKLASPVPTEYD 442
           C +Y HP    KL   +  EYD
Sbjct: 35  CKNYDHPTTLLKLKRYLFCEYD 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,806
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)