Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G21
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.30 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   1.6  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   2.8  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.7  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   4.9  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   4.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   6.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    24   8.5  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    24   8.5  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 237 LQFSQSLSASNRSPTQAYHAGTNFRMLRLSNTHLLPS*QSIFSIF 103
           LQ SQ +  S  +P Q      NF   R+SN+H+ P     FS F
Sbjct: 183 LQSSQHIPPS--TPAQKLRKKNNFDSFRISNSHISPFASGSFSPF 225


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 195 WVNDCLHSNFGKIEELCTGAAYCQFMD 275
           W   C+H N+G ++ + T      F+D
Sbjct: 405 WAKKCVHINYGLVQGMSTRKGKAVFLD 431


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 KLKNYAQAPHIVSLWTCYFLAV 294
           K+ +Y+Q  H+ S+W  Y L V
Sbjct: 89  KIADYSQFKHLHSMWCSYILEV 110


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 267 TDNMRRLCIVLQFSQSLSASNRSPTQAYH 181
           T ++   C+ +  +  L ASN+ PTQA H
Sbjct: 117 TSDLVLFCLQIFMALILIASNKRPTQASH 145


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 194 VGERLLALKLWEN*RTMHRRRILSV--YGHAISWQCTYEK 307
           VG++L+ L +W         RIL +  Y H+  W+  + K
Sbjct: 78  VGQKLVELVVWRERNPKRETRILGILQYIHSSVWKYLFGK 117


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 340 SHGSKLVLNCILFIGTLPGNSMSIN 266
           S   KL+ N  L    LPGN++ +N
Sbjct: 584 STSRKLIQNLFLLFPLLPGNAIDVN 608


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 229  FPKFECKQSFTHASISCRDKFSDVTFVEYT 140
            +P   C      +S S ++ F D  F+ YT
Sbjct: 934  YPSSLCDNVLVRSSPSPKNNFDDTVFISYT 963


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 198 PTQAYHAGTNFRMLRLSNTHLLPS*QSIF 112
           P Q YH   N   ++ + +HLL + Q++F
Sbjct: 128 PDQVYHLIDNHSCIQTAVSHLLRNHQALF 156


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 123 QSIFSIFRLL*ASSKRQLFYNFLIHIIKVSK 31
           +S +S+F+ + A  K ++   FL H++  SK
Sbjct: 173 KSAYSVFQDMPAVEKARILTQFLSHLLNSSK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,991
Number of Sequences: 5004
Number of extensions: 28961
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)