Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G21
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    56   9e-09
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    56   9e-09
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413...    28   2.0  
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155     26   7.9  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    26   7.9  

>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +3

Query: 171 LSRHDMLAWVNDCLHSNFGKIEELCTGAAYCQFMDMLFPGSVPMKRIQFKTNLE 332
           + R+++LAW+N  L     K+EE  +GA  CQ MD   PG+VPM ++ F    E
Sbjct: 15  VGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTE 68


>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +3

Query: 171 LSRHDMLAWVNDCLHSNFGKIEELCTGAAYCQFMDMLFPGSVPMKRIQFKTNLE 332
           + R ++L+W+N  L  +  K+EE  +GA  CQ MDM+ PG VPM ++ F    E
Sbjct: 19  VGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTE 72


>10_08_0486 -
           18239351-18239592,18240893-18240984,18241279-18241364,
           18241442-18241643,18241743-18241960,18242524-18242640
          Length = 318

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 221 LWEN*RTMHRRRILSVYGHAISW 289
           LW N RT  R R++S++G A SW
Sbjct: 277 LWTNPRTGDRDRMVSLFGAADSW 299


>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
          Length = 918

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 169 FSDVTFVEYTFTAILTINLQYL 104
           F D+TF+    T+I   NLQYL
Sbjct: 886 FDDMTFLLIIITSIFCFNLQYL 907


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 337 HGSKLVLNCILFIGTLPGNSMSIN*-QYAAPVHSSSIFPKFECKQ 206
           H +K+   C   +   P  SM +   + A   HS S+F  F C++
Sbjct: 322 HKTKVKKLCKTILRQAPAQSMKLKELKVAVEAHSESMFSNFSCRR 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,135
Number of Sequences: 37544
Number of extensions: 163532
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)