Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G20
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   5.4  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.5  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +2

Query: 275 TASSTTETVHPIPSD-----SIGTFISSFERSII*TSD---PANTSGSLSEATKPS 418
           T+SS   TV PI  D     ++  F S++++     S+   P N S S + +TKPS
Sbjct: 126 TSSSNLSTVTPIKQDHQKPMNLQGFPSAYQQHQYLQSNHNVPTNNSSSATSSTKPS 181


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 523 LASGPERALLRDPSVADSAAIAVVERTIAASSETVARLCC 404
           L SGP R LL +P       + VVE+ I  ++  V  + C
Sbjct: 113 LESGPNRNLLFEPCPYLKEVMPVVEKGIKTNNARVLDIGC 152


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 130 AVDLVGDAAVAEVVPGSWLSRWNLAN 53
           A    G+A    V+  SW S WN  N
Sbjct: 267 ATQTFGNAPDGRVISISWASNWNYTN 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,474
Number of Sequences: 5004
Number of extensions: 27100
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)