Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G20
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117274-1|AAI17275.1|  643|Homo sapiens LRRC37A3 protein protein.     31   2.6  
BC113643-1|AAI13644.1|  643|Homo sapiens LRRC37A3 protein protein.     31   2.6  
BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat con...    30   4.5  

>BC117274-1|AAI17275.1|  643|Homo sapiens LRRC37A3 protein protein.
          Length = 643

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
 Frame = +2

Query: 95  FSYRCV-SYQIYCLCQWKPSVLYRANI*PVERTVRYSIISGTSSN*RRVKL-KPETAAIR 268
           F YR V S+   CLCQ+K S+   A    V+     + ++ T+       +  PE A ++
Sbjct: 24  FIYRIVPSHMACCLCQFKNSI--EAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMK 81

Query: 269 CSTA----SSTTETVHPI-PSDSIGTFISSFERSII*TSDPANTSGSLS 400
              A    +ST   + P  PSDS G  +S F    + T+D ++ + +LS
Sbjct: 82  VLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLS 130


>BC113643-1|AAI13644.1|  643|Homo sapiens LRRC37A3 protein protein.
          Length = 643

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
 Frame = +2

Query: 95  FSYRCV-SYQIYCLCQWKPSVLYRANI*PVERTVRYSIISGTSSN*RRVKL-KPETAAIR 268
           F YR V S+   CLCQ+K S+   A    V+     + ++ T+       +  PE A ++
Sbjct: 24  FIYRIVPSHMACCLCQFKNSI--EAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMK 81

Query: 269 CSTA----SSTTETVHPI-PSDSIGTFISSFERSII*TSDPANTSGSLS 400
              A    +ST   + P  PSDS G  +S F    + T+D ++ + +LS
Sbjct: 82  VLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLS 130


>BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat
            containing 37, member A3 protein.
          Length = 1634

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = +2

Query: 113  SYQIYCLCQWKPSVLYRANI*PVERTVRYSIISGTSSN*RRVKL-KPETAAIRCSTA--- 280
            S+   CLCQ+K S+   A    V+     + ++ T+       +  PE A ++   A   
Sbjct: 1022 SHMACCLCQFKNSI--EAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKN 1079

Query: 281  -SSTTETVHPI-PSDSIGTFISSFERSII*TSDPANTSGSLS 400
             +ST  T+ P  PSDS G  +S F    + T+D ++ + +LS
Sbjct: 1080 YTSTELTIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLS 1121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,701,515
Number of Sequences: 237096
Number of extensions: 934830
Number of successful extensions: 2221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)