Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G19
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   1.9  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   4.5  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   7.8  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 153 F*VTIVNIDDSLSTDYINRLPPH*TNHHK 67
           F  + +++D +LS+ ++N++ P    HHK
Sbjct: 416 FYTSFISLDKNLSSKFVNQITPDNRLHHK 444


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 467 RSESALKLSAKAPGVS*QKYEPKQRKHINNR 375
           +++S L  S+  P ++ Q+Y P   KH ++R
Sbjct: 551 KADSTLSASSLNPDLNLQRYTPTVEKHASDR 581


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 KHLEYHNRNMNQNKENTSITERKIY 362
           KHL+Y++RN N+   +   T+ + Y
Sbjct: 306 KHLDYNSRNYNKRDRDPDRTKYREY 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,347
Number of Sequences: 5004
Number of extensions: 33884
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)