Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G19
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0339 - 24513699-24516827                                         29   2.5  
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959...    27   7.7  

>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 214 VITRTLHNISTTKNFM*TKTITMENPESSGNNRSPQVNPTSWCHPAHRVH 363
           +I  ++ N+   KNF  ++T   E PES G  ++ QV   S C     +H
Sbjct: 599 IIPDSICNLQFLKNFNLSRTEIAELPESVGKMQALQVLDLSHCEKLLHLH 648


>11_06_0689 -
           26294961-26294976,26295271-26295414,26295506-26295909,
           26296112-26296261,26296334-26296497,26296526-26296836,
           26296948-26297084,26297276-26297416,26297821-26297867,
           26297977-26298072,26298168-26298249,26298332-26298472,
           26298607-26298702,26298809-26298877,26298959-26299030,
           26299201-26299368,26299577-26299711,26299792-26299958,
           26301213-26301369
          Length = 898

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 413 KYEPKQRKHINNRAKNLCTL*AGWHH 336
           KY  +Q+KHI +   NL T+ +G  H
Sbjct: 325 KYFDQQQKHIKDLKSNLATMKSGMEH 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,303
Number of Sequences: 37544
Number of extensions: 186042
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)