Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G18
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 178 4e-46
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 177 8e-46
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 146 1e-36
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 31 0.11
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.19
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 1.7
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 1.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 1.7
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 26 3.0
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.0
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 5.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 5.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.3
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 25 5.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 5.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 5.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.0
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 9.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.3
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 178 bits (434), Expect = 4e-46
Identities = 74/133 (55%), Positives = 107/133 (80%), Gaps = 1/133 (0%)
Frame = +3
Query: 102 INNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIE 281
INNGVFV+ NKAT ML++ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N++IE
Sbjct: 119 INNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIE 178
Query: 282 KRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGN 458
L K +I+ +EDLIHEI+TVG FK A+NF+WPF+L++P GGWR +K H+++GGD G
Sbjct: 179 AALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGK 238
Query: 459 REDKVNELLRRMV 497
R++ +N L+R+M+
Sbjct: 239 RDEHINSLVRKML 251
Score = 43.2 bits (97), Expect = 2e-05
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2
Query: 5 EEAKLAFVIRIRGVNQVSPKVRKVLQL 85
+E KL FVIRIRG+N + PK RK++QL
Sbjct: 87 DETKLVFVIRIRGINNIPPKARKIMQL 113
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 177 bits (431), Expect = 8e-46
Identities = 74/133 (55%), Positives = 106/133 (79%), Gaps = 1/133 (0%)
Frame = +3
Query: 102 INNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIE 281
INNG+FV+ NKA ML++ EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE
Sbjct: 118 INNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIE 177
Query: 282 KRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGN 458
L K +I+ VEDLIHEI+TVG FK A+NFLWPFKL++P GGWR +K H+++GGD G
Sbjct: 178 AALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGK 237
Query: 459 REDKVNELLRRMV 497
R++ +N L+++M+
Sbjct: 238 RDEHINGLVQKML 250
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +2
Query: 8 EAKLAFVIRIRGVNQVSPKVRKVLQL 85
E KL FV+RIRG+N + PK RK++QL
Sbjct: 87 EPKLIFVVRIRGINNIPPKARKIMQL 112
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 146 bits (355), Expect = 1e-36
Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Frame = +3
Query: 60 PRYARYCSCQAASIINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKL 239
P+ + S INN VFVR NKA MLRI EPY+ +G PNL SVREL+YKRGF K+
Sbjct: 103 PKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKI 162
Query: 240 NGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WR 416
NG+R+ ++ N+LIE+ L K ++I +ED+IHEI+ VG FK + FLWPF L
Sbjct: 163 NGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLME 222
Query: 417 KKTIHYVDGGDFGNREDKVNELLRRMV 497
KK H+ +G G +++NEL+++ V
Sbjct: 223 KKVKHFNEGRKAGYCGEEINELIKKQV 249
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 5 EEAKLAFVIRIRGVNQVSPKVRKVLQL 85
+E KL FVIRI GV + PK+RKVL+L
Sbjct: 85 DETKLLFVIRIAGVKNMPPKIRKVLRL 111
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 271 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 375
HSS + L+N+ SSAL+++ + S +SSS+Q +S
Sbjct: 90 HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSS 124
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 30.3 bits (65), Expect = 0.19
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 189 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS--KQNIICVEDLIHEIFTVGEKFKY 362
N KSV + G L G ++ I+ + ++ R+ KQ ++ +E L H++ + K+
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELE-LSHKVCVISYSAKF 200
Query: 363 ASNFLWPFK 389
AS F PF+
Sbjct: 201 ASGFFGPFR 209
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 186 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 308
P LK+ REL+ K+ + V SN ++EK L +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 427 IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMF--CLLSLFSMSELEVI 257
IV++ Q + LFSL G L ++ + T+ SW ++ CLLS+ + ++ I
Sbjct: 68 IVYILQ--IFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 78 CSCQAASIINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKR 224
C CQ A +I+N L+ A R + + WG+ +++L+ ++
Sbjct: 120 CCCQFAFVISNPRKPSLSVANSAHCRFSPEIVDWGFTQFAELKKLLCRQ 168
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 138 WPC*DERTRRC*LLTQPDSCNTLRTLGDTW 49
WP +E TR+ + D N L T +TW
Sbjct: 228 WPAPEEETRKADVTNSLDPANVLSTELNTW 257
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 389 FEWPQEVTCVLELLTDSKYLMDEILNADDV-LFAKSLLD 276
F W CV S+Y+M +N D FA S LD
Sbjct: 125 FNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLD 163
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.0
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +1
Query: 103 STTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TG-------SVSRS 261
STTA S ST P T S + +TP V+ + T+A S T SVS +
Sbjct: 462 STTATSASST-PL-TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSST 519
Query: 262 PPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN*TT 399
P++++ L + S+ +SS + +SST +TS + T+
Sbjct: 520 APSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATS 565
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 497 DHSPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQF 387
D + L D ++A+TE+A +V +L P V+ F
Sbjct: 232 DRDSDNLADCLMAITEIA--EVFPKLFKPIFESVIAF 266
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 262 PPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 390
PP HS+ D++N ++ AL S+M + ++ST+ T ++N
Sbjct: 110 PPFHSANSDVSNNSNGALS-SNMLKTHAHHTNSTKSTIFRNAN 151
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.3
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +1
Query: 103 STTACSFVSTRPQ*TC--FVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHS 276
ST++ +F S P T ++S S ++ ++ S S T++ + S S P T S
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS-----SLSTSSIPSTSS 245
Query: 277 SRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 390
S ++ TSS+L SS S SSS+ + S S+
Sbjct: 246 S----SSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -2
Query: 361 YLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGT 251
Y++ PT+++ ++ S+ +FCL L S++ LE++ T
Sbjct: 253 YVHEYPTLDLIYIFSALMSVFCL--LLSVASLELLHT 287
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 527 FLITIYFYLLDHSPEELVDLVLAVTEVAAVDV-VNRL 420
FL +Y+Y SP D+ A+T DV +NRL
Sbjct: 550 FLSLVYYYCPIESPVSKSDVYNAITSAVKRDVFINRL 586
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -1
Query: 530 FFLITIYFYLLDHSPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQ 390
FFL+++ + L+ + + L + + V +VDV+ L S++++Q
Sbjct: 343 FFLVSLCDHFLEGARKLLAEAYCRIHSVISVDVLANKLEMDSAQLIQ 389
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.3
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 145 TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRIS 324
T S S ++ ++P S S ++ S T S S S THSS A +SSA+ S
Sbjct: 676 TLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTS 735
Query: 325 -SMRYLLSVRSSSTQVTSCGHSN 390
+ L++ SS+T ++S S+
Sbjct: 736 VNSSTLITASSSNTLLSSITSSS 758
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 7.0
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 157 SLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPP-THSSRRDLANRTSSALRISSMR 333
S SP L ++ T S S+ T+ VS + S S S T SS L + +S++ SS
Sbjct: 62 SSSP-LSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSS 120
Query: 334 YLLSVRSSSTQVTS 375
+ LS SSS +S
Sbjct: 121 HALSSSSSSLVASS 134
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 395 VQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAKSLLD 276
V+F PQ + +L +KYL D+++ D+ A L+D
Sbjct: 136 VKFTEPQIKCYMKQLFAGTKYLHDQLILHRDLKAANLLID 175
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 202 SESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 375
S S +++ S + S + +HSS ++ +SS+ R SS ++ SSST +++
Sbjct: 195 SSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST 252
Score = 24.6 bits (51), Expect = 9.3
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +1
Query: 157 SLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRY 336
S SP T T S S +++ S + + S S S + SS ++ +SS+ SS
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 199
Query: 337 LLSVRSSSTQVTSCGHSN 390
S SSS +TS S+
Sbjct: 200 SSSSSSSSVPITSSTSSS 217
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 418 LRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSE 269
LR P L +L GH + L +SP SST C+ L + E
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEKIGE 360
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 427 IVFLRQPPVGLFSLNGHR-KLLAYLNFSPTVNIS 329
++F RQP + S+ GHR +++ Y F ++++
Sbjct: 448 VIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVT 481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,163
Number of Sequences: 5004
Number of extensions: 38783
Number of successful extensions: 156
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -