Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G18
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 219 1e-57
Z78415-3|CAB01674.1| 530|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical pr... 28 4.8
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 4.8
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 4.8
AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical ... 27 6.3
U13645-2|AAM15543.1| 367|Caenorhabditis elegans Hypothetical pr... 27 8.4
U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 219 bits (535), Expect = 1e-57
Identities = 95/147 (64%), Positives = 119/147 (80%)
Frame = +3
Query: 57 HPRYARYCSCQAASIINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAK 236
HP+ + INNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK
Sbjct: 98 HPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAK 157
Query: 237 LNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR 416
++G RVPIT N+++E+ L K NIIC+EDL HEI TVG FK A+NFLWPFKLNNPTGGW
Sbjct: 158 VDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWT 217
Query: 417 KKTIHYVDGGDFGNREDKVNELLRRMV 497
KKT H+V+GGDFGNRED++N LLR+MV
Sbjct: 218 KKTNHFVEGGDFGNREDQINNLLRKMV 244
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 8 EAKLAFVIRIRGVNQVSPKVRKVLQL 85
E K+AFV+RIRG+NQ+ PK RK LQ+
Sbjct: 82 EHKVAFVVRIRGINQLHPKPRKALQI 107
>Z78415-3|CAB01674.1| 530|Caenorhabditis elegans Hypothetical
protein C17G1.3a protein.
Length = 530
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 291 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDK 470
+KQ II ++ + EIF+ EKF SN +W +++NP W I G + K
Sbjct: 71 AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRILTQLFGKQCTKVMK 127
Query: 471 VNELLRRM 494
++ELL ++
Sbjct: 128 LSELLDQL 135
>Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical
protein F38H4.4 protein.
Length = 501
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = -1
Query: 500 LDHSPEELVDLVLAVTEVAAVDVVNRL------LAPTSSRVVQFEWPQEVTCVLELLTDS 339
LDHS L D +D R L TS+ Q Q V CVL LLTDS
Sbjct: 237 LDHSKVHLSDSSYIHASYLELDTQKRAILTQLPLPHTSADFWQMIIEQRVKCVLLLLTDS 296
Query: 338 KY 333
+Y
Sbjct: 297 EY 298
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -1
Query: 485 EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 306
++ + +V TE+ VD + L T S ++F E+ + T+ ++ + L A
Sbjct: 915 DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972
Query: 305 DVLFAKSLLDE*VGGDRDTLPVQFGETAF 219
VLF S+ E +GG + ET F
Sbjct: 973 TVLFKVSIFREKMGGQDPPIITIQSETNF 1001
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -1
Query: 485 EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 306
++ + +V TE+ VD + L T S ++F E+ + T+ ++ + L A
Sbjct: 915 DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972
Query: 305 DVLFAKSLLDE*VGGDRDTLPVQFGETAF 219
VLF S+ E +GG + ET F
Sbjct: 973 TVLFKVSIFREKMGGQDPPIITIQSETNF 1001
>AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical
protein T01A4.3 protein.
Length = 710
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 291 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 404
S+Q+ C +H + + ++F + LW +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398
>U13645-2|AAM15543.1| 367|Caenorhabditis elegans Hypothetical
protein C05D10.2c protein.
Length = 367
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 488 PEELVDLVLAVTEVAAVDVVNRLL 417
P + +DL++ ++ AA+D+V RLL
Sbjct: 264 PRKPLDLIITQSQTAAIDMVQRLL 287
>U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical
protein C05D10.2a protein.
Length = 470
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 488 PEELVDLVLAVTEVAAVDVVNRLL 417
P + +DL++ ++ AA+D+V RLL
Sbjct: 264 PRKPLDLIITQSQTAAIDMVQRLL 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,128,447
Number of Sequences: 27780
Number of extensions: 216068
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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