Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G17
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   1.7  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   5.1  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   5.1  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    24   6.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    24   6.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    24   9.0  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    24   9.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   9.0  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 86 NGRSRSDFSLKTILDKPSFILSV 18
          N R++++ SLK +  +PSF+L+V
Sbjct: 16 NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 247 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELP 357
           GG L  V G   S   +LGD+K  R K S A+ +   +P
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIP 206


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 243 LELRCHRHY*HRHTQIFQQRFEYNTANKF 157
           L++R H      HT I+   F+ N+ NKF
Sbjct: 6   LQIRWHYDANDDHTPIYSVDFQKNSLNKF 34


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 307 YHPASGQMIHRIRRHAQGFHR 245
           +HPA  +   R+RR+  GF R
Sbjct: 236 HHPADVEEARRLRRYNMGFSR 256


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -2

Query: 365 ESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 231
           E+D S  V L  S SL   +  +I     SN T    FPP  SSG
Sbjct: 86  ENDQSLLVTLKVSTSLGQKIE-NILHPKLSNDTNSTAFPPAKSSG 129


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 374 SMQESDGSSNVALSASDSLVLFLSPSIRTDDSSN 273
           +MQE   S ++       L L LS   + +DS N
Sbjct: 308 NMQELSNSDDICAEKESRLKLVLSEKAKLEDSKN 341


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 359 DGSSNVALSASDSLVLFLSPSI 294
           DG + V  SASD L+LF+  +I
Sbjct: 17  DGDNVVVYSASDPLLLFIVQAI 38


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -2

Query: 374 SMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSGVTVTIDIDIPRF 195
           S  ESD  S+ + S SDS+    +P   +D S   T+ AR     +SG     D   P +
Sbjct: 87  SHDESDSMSSSSESDSDSVSSESNPKSYSDSS---TSSAR--SSSTSGSISLYDDYYPAY 141

Query: 194 SNNA 183
           S+NA
Sbjct: 142 SSNA 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,139
Number of Sequences: 5004
Number of extensions: 23467
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)