Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G17
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0874 - 22202699-22203070,22204239-22204874                       28   2.7  
11_06_0220 - 21374816-21376849                                         27   4.8  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    27   4.8  
01_01_0822 - 6401993-6402133,6402542-6402708,6402865-6402966,640...    27   4.8  
11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    27   6.3  

>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 338 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 231
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 4   RGFMDTLKIKLGLSNIVLSEKSLLDLPFRAGAVKHVLL 117
           RG M T+ IKLG    +    +LLDL    G ++  ++
Sbjct: 240 RGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVM 277


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 289 VLMLGDKKRTKESEALRATLELPSDSCID 375
           V+  GDK   +ES    +T+ LPS  C D
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGD 226


>01_01_0822 -
           6401993-6402133,6402542-6402708,6402865-6402966,
           6403437-6403577,6403685-6403768,6403858-6404164,
           6404286-6404357
          Length = 337

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +1

Query: 214 SIVTVTPELKC--GGNLAH----VVGFDESSVLMLGDKKRTKESEALRATLELPSDSC 369
           SI+T +PE     GGN+      ++  D S+  + G K    + E L    E PSDSC
Sbjct: 120 SILTKSPESDSSEGGNIEVNEQCMLPVDTSAAEISGGKSIDVDEEVLSGNSEKPSDSC 177


>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 235 ELKCGGNLAHVVGFDESSVLMLG 303
           +L C GN+AHVV     S  MLG
Sbjct: 365 QLACAGNVAHVVVMPHVSFEMLG 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,755
Number of Sequences: 37544
Number of extensions: 154606
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)