Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G17
         (375 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74719-1|AAA60311.1|  667|Homo sapiens SEF2-1B protein protein.        28   8.6  
M74718-1|AAA60310.1|  495|Homo sapiens SEF2-1A protein protein.        28   8.6  
BC125085-1|AAI25086.1|  667|Homo sapiens transcription factor 4 ...    28   8.6  
BC125084-1|AAI25085.1|  671|Homo sapiens TCF4 protein protein.         28   8.6  
AB209741-1|BAD92978.1|  435|Homo sapiens transcription factor 4 ...    28   8.6  

>M74719-1|AAA60311.1|  667|Homo sapiens SEF2-1B protein protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 356 GSSNVALSASDSLVLFLSPSIRTDD-SSNPTTCARFPPHLSSGVTV 222
           GSS    +   +L    SP    +  SSNP+T    PP LS+G  V
Sbjct: 316 GSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAV 361


>M74718-1|AAA60310.1|  495|Homo sapiens SEF2-1A protein protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 356 GSSNVALSASDSLVLFLSPSIRTDD-SSNPTTCARFPPHLSSGVTV 222
           GSS    +   +L    SP    +  SSNP+T    PP LS+G  V
Sbjct: 140 GSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAV 185


>BC125085-1|AAI25086.1|  667|Homo sapiens transcription factor 4
           protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 356 GSSNVALSASDSLVLFLSPSIRTDD-SSNPTTCARFPPHLSSGVTV 222
           GSS    +   +L    SP    +  SSNP+T    PP LS+G  V
Sbjct: 316 GSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAV 361


>BC125084-1|AAI25085.1|  671|Homo sapiens TCF4 protein protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 356 GSSNVALSASDSLVLFLSPSIRTDD-SSNPTTCARFPPHLSSGVTV 222
           GSS    +   +L    SP    +  SSNP+T    PP LS+G  V
Sbjct: 316 GSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAV 361


>AB209741-1|BAD92978.1|  435|Homo sapiens transcription factor 4
           isoform b variant protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 356 GSSNVALSASDSLVLFLSPSIRTDD-SSNPTTCARFPPHLSSGVTV 222
           GSS    +   +L    SP    +  SSNP+T    PP LS+G  V
Sbjct: 201 GSSQTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAV 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,335,251
Number of Sequences: 237096
Number of extensions: 817521
Number of successful extensions: 1812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)