Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G17
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    26   7.6  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    26   7.6  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    26   7.6  

>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 374 SMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 258
           S  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 9   SRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 374 SMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 258
           S  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 9   SRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical
          protein F28A12.3 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 81 KIQKRLFTQNNIGQTKFYFEC 19
          K+ K++FT+ NI   K+Y +C
Sbjct: 36 KLTKKMFTELNISPDKYYGDC 56


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 270 DDMRKVSTALELRCHRHY*HRHTQIFQQR--FEYNTANKFE*DELIDARLRHCQE 112
           DD+ +++ A++   H H+ H H    Q +   +Y+T  + E  E +  R    QE
Sbjct: 24  DDIDELTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEEVETLETVHHRTSLNQE 78


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 270 DDMRKVSTALELRCHRHY*HRHTQIFQQR--FEYNTANKFE*DELIDARLRHCQE 112
           DD+ +++ A++   H H+ H H    Q +   +Y+T  + E  E +  R    QE
Sbjct: 24  DDIDELTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEEVETLETVHHRTSLNQE 78


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 236  SSSAVETLRMSSDSMNHLS 292
            SSSA  TLR SSDS  H+S
Sbjct: 1430 SSSAPITLRKSSDSSEHIS 1448


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 236  SSSAVETLRMSSDSMNHLS 292
            SSSA  TLR SSDS  H+S
Sbjct: 1606 SSSAPITLRKSSDSSEHIS 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,842,670
Number of Sequences: 27780
Number of extensions: 132750
Number of successful extensions: 371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)