Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G17
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   2.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 147 ELIDARLRHCQENVFNSTGAEWKIQKRLFTQNNIGQT 37
           EL++A L+  Q         E +IQK+  T N I +T
Sbjct: 766 ELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKT 802


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 374 SMQESDGSSNVALSASDSLVLFLSPSIRT 288
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 156 SISQANEGFCAVISMHDGLVLYTTPSICT 184


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 374 SMQESDGSSNVALSASDSLVLFLSPSIRT 288
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 151 SISQANEGFCAVISMHDGLVLYTTPSICT 179


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 61 HSKQYWTNQVLF*VYP*SLV 2
          ++K +W N + + VYP S +
Sbjct: 20 NNKGWWKNAIFYQVYPRSFM 39


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 80  RSRSDFSLKTILDKPSFILSVSIK 9
           ++ +D  L+   DK  F+L+ SIK
Sbjct: 239 KTPNDEELEKPTDKRMFVLAASIK 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,808
Number of Sequences: 438
Number of extensions: 1590
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)