Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G16
         (96 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    18   9.4  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 13 IVPPNGKNISDFDV 54
          + PP G+N+ D D+
Sbjct: 47 VTPPQGENMLDMDL 60


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 31  KNISDFDV*FCSIVPFLP 84
           +N SD+   FC+IV   P
Sbjct: 349 ENESDYQDAFCNIVSCSP 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 7    GFIVPPNGK 33
            G+I PPN K
Sbjct: 1644 GYIAPPNRK 1652


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 51  VKVRDVLPVRRHYEPS 4
           +   DV+P+RR  E S
Sbjct: 155 INPEDVIPIRRTGEGS 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,200
Number of Sequences: 438
Number of extensions: 222
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 13
effective length of database: 140,649
effective search space used:  2531682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)