Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G13
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    29   0.54 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    29   0.71 
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   6.6  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   6.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.8  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 235 KFINYLRQYKALYTYYLNPKFLKNGGDEFFVGRA-GYIAGSL 357
           KF ++ R  +ALYTY   PK + +  ++  +  A GY+AG L
Sbjct: 193 KFASFERIVEALYTYIGKPKNMYSKAEKIGISFAGGYMAGVL 234


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -1

Query: 436 QKPQLYHKFCTICH**KFVFEF--LY*SIKILQCNQLGQQKIHHHHSLE 296
           Q+P +Y  FC IC           +Y    +  CN  G + + H   LE
Sbjct: 292 QRPNIYQTFCEICKMRNVPIHIYDIYNGKNVSSCNPSGSEYLQHASKLE 340


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 43  GISFMFYCLSKNPKLSESRGEYFKKAMEYLKPALETTAG 159
           G++      +KNPK S+S   +FK    Y K   E   G
Sbjct: 369 GVNAQLITKTKNPKWSKSHEYHFKDLENYFKLPSEYNNG 407


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +1

Query: 4   RGHVEGGLYVGSSGISFMFYCLSKNPKLSESRG------EYFKKAMEYLKPALETTAGDK 165
           R  + G LY   +   F+F    K P  +ES G      +Y K  ++     L T   + 
Sbjct: 305 RDIIVGQLYGHMNINHFVFLEFDKLPVDTESYGIKSAQPKYVKSLIDAQYAELPTFPENL 364

Query: 166 TS-FLLGDAGTYALATV 213
           T  FL G  G Y+LATV
Sbjct: 365 TEEFLNGTVGNYSLATV 381


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 173 NEVLSPAVVSNAGFKYSIAFLKY 105
           N VL+P + SNA  ++S  +L Y
Sbjct: 555 NSVLNPCIPSNAVIEFSSIYLHY 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,548
Number of Sequences: 5004
Number of extensions: 56260
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)