Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G12
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    38   0.001
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.1  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    26   5.1  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   6.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   9.0  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 498 AAKNKLFITVAMGVNTATVEKILPAEARVIRVMPNTPALVKE 623
           A K KL +++  G   ++++ +L    RVIR+MPNT + ++E
Sbjct: 102 ALKGKLILSILAGKTISSLQSMLDESTRVIRIMPNTASRIRE 143


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 487  RMCQQQRINFSSPSLWE*IQLPWKRFSQQKRVSSVLCPTLQ 609
            ++ Q   + F +PS W+ +   W+     ++V   +C  LQ
Sbjct: 1455 KLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
          3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 29 RILREILYYVSIHILFLIPY 88
          RI + ILYYVS+ IL+ + Y
Sbjct: 3  RIHKVILYYVSLTILYRVTY 22


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 345 DGNWP*SHRVLLSLLK*IRWPMRMPVYHL 259
           D NW   HR+ LSLL   RW + + V HL
Sbjct: 267 DENWKRDHRLELSLLDNKRW-VNILVSHL 294


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 154 KEIRSLCNLRLLKSLKFVGI*LNY 225
           ++IRSL +LR L++LK + I L+Y
Sbjct: 303 RDIRSLDHLRTLENLKHLRITLSY 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,367
Number of Sequences: 5004
Number of extensions: 42276
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)