Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G12
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...    56   3e-08
02_03_0131 - 15576422-15577021                                         30   1.3  
11_06_0550 + 24879074-24881290                                         28   7.0  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    28   7.0  
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268     28   7.0  
09_06_0005 - 20135073-20135249,20136047-20136824,20137794-201378...    27   9.2  
04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845...    27   9.2  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 39/128 (30%), Positives = 58/128 (45%)
 Frame = +3

Query: 234 EAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPLDVASAEAFKGIGATALFENKX 413
           E  ++GFIG G LA ++A G  ++G+     I  + H      AEAF  IGA  L  N  
Sbjct: 17  EVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRP-ERAEAFSSIGAHILETNAQ 75

Query: 414 XXXXXXXXXXXXXXXXXXPALKEIKDVPAAKNKLFITVAMGVNTATVEKILPAEARVIRV 593
                               L E+K +  ++ KL +++A G+    ++       R IRV
Sbjct: 76  VVDDSDVIVISVKPQIVRQVLVELKPL-LSEEKLLVSIAAGIKMEDLQG-WSGHRRFIRV 133

Query: 594 MPNTPALV 617
           MPNTP+ V
Sbjct: 134 MPNTPSAV 141


>02_03_0131 - 15576422-15577021
          Length = 199

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 449 QTRRGSAGVKRNQGCASSKE*TFHHRRYGSKYSYRGKDSPSRSA 580
           + RRG    KR++  ++ +     HRR+   +S+RG+ SPS  A
Sbjct: 54  ERRRGERDRKRSRSPSADRS----HRRHSHSHSHRGRSSPSPDA 93


>11_06_0550 + 24879074-24881290
          Length = 738

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 98 KFTYTELRKEYES--IRNIIFPSIY 30
          KF+YT+LRKEY+S  +   IFP  Y
Sbjct: 3  KFSYTDLRKEYKSCFLYLAIFPPGY 27


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 98  KFTYTELRKEYES--IRNIIFPSIY 30
           KF+YT+LRKEY+S  +   IFP  Y
Sbjct: 818 KFSYTDLRKEYKSCFLYLAIFPPGY 842


>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
          Length = 667

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 470 RHYHVWFDRHYN 435
           +HY VWFD H+N
Sbjct: 90  KHYKVWFDTHFN 101


>09_06_0005 -
           20135073-20135249,20136047-20136824,20137794-20137854,
           20138253-20138523
          Length = 428

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 146 FNIF*TRKLFLAFFNTKFTYTELRKEYESIRNIIFPSIYV*NVWT 12
           F  F T ++ LAFF  +  + +  +++  +R  + PS Y    WT
Sbjct: 60  FTTFRTIEVALAFFEYQHRHQQHDEQHNPVRGRVKPSQYTIYTWT 104


>04_04_1151 -
           31284094-31284204,31284375-31284434,31284518-31284595,
           31284688-31284812,31284898-31285906,31286513-31286920,
           31287323-31287400,31287524-31287934
          Length = 759

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 449 QTRRGSAGVKRNQGCASSKE*TFHHRRYGSKYSYRGKD 562
           Q R G  GVKR    A S++     RR G++  + GK+
Sbjct: 123 QKRSGRQGVKRATAKAPSRQALAERRRRGARGQFLGKE 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,077
Number of Sequences: 37544
Number of extensions: 269274
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)